Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | GYH29_RS23015 | Genome accession | NZ_AP019312 |
| Coordinates | 4972651..4973787 (-) | Length | 378 a.a. |
| NCBI ID | WP_043589323.1 | Uniprot ID | - |
| Organism | Chromobacterium haemolyticum strain CH06-BL | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4967651..4978787
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYH29_RS22995 (CH06BL_45440) | - | 4968389..4968778 (-) | 390 | WP_043589328.1 | VOC family protein | - |
| GYH29_RS23000 (CH06BL_45450) | - | 4968937..4969644 (-) | 708 | WP_019100948.1 | pseudouridine synthase | - |
| GYH29_RS23005 (CH06BL_45460) | - | 4969686..4971602 (-) | 1917 | WP_161524452.1 | diguanylate cyclase | - |
| GYH29_RS23010 (CH06BL_45470) | - | 4971932..4972519 (+) | 588 | WP_043589326.1 | TetR/AcrR family transcriptional regulator | - |
| GYH29_RS23015 (CH06BL_45480) | pilU | 4972651..4973787 (-) | 1137 | WP_043589323.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GYH29_RS23020 (CH06BL_45490) | pilT | 4973833..4974870 (-) | 1038 | WP_043589321.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GYH29_RS23025 (CH06BL_45500) | - | 4975146..4975838 (+) | 693 | WP_039755535.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GYH29_RS23030 (CH06BL_45510) | proC | 4975892..4976695 (+) | 804 | WP_019102523.1 | pyrroline-5-carboxylate reductase | - |
| GYH29_RS23035 (CH06BL_45520) | - | 4976704..4977285 (+) | 582 | WP_019102524.1 | YggT family protein | - |
| GYH29_RS23040 (CH06BL_45530) | - | 4977376..4977681 (+) | 306 | WP_019102525.1 | c-type cytochrome | - |
| GYH29_RS23045 (CH06BL_45540) | dksA | 4977966..4978376 (+) | 411 | WP_019102526.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42326.44 Da Isoelectric Point: 6.2382
>NTDB_id=72394 GYH29_RS23015 WP_043589323.1 4972651..4973787(-) (pilU) [Chromobacterium haemolyticum strain CH06-BL]
MEKDQASKFILDLLKHATGKNASDVFIAADFPPAMKIDGKITPVAPQPLSAQHTKELVRAVMNDRQTEEFETKKEANFAI
NPPGLGRFRVSAYVQQGHAGMVLRKINTEIPTFDQLNLPLVLRDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSHNHD
HIITIEDPIEYVHQHKKSIITQREVGVDTDDWDIALKNTLRQAPDVILMGEIRDRETMGYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRSIISQRLVPIKSGRGRVAAVEILLNSPLVSDMIFKGEIASLKEVMGRSRETG
MQTFDQSLFELYEADLISYEDALRNADSINDLRLKIKLYSEGSKSRDPLEGIDHLDIV
MEKDQASKFILDLLKHATGKNASDVFIAADFPPAMKIDGKITPVAPQPLSAQHTKELVRAVMNDRQTEEFETKKEANFAI
NPPGLGRFRVSAYVQQGHAGMVLRKINTEIPTFDQLNLPLVLRDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSHNHD
HIITIEDPIEYVHQHKKSIITQREVGVDTDDWDIALKNTLRQAPDVILMGEIRDRETMGYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRSIISQRLVPIKSGRGRVAAVEILLNSPLVSDMIFKGEIASLKEVMGRSRETG
MQTFDQSLFELYEADLISYEDALRNADSINDLRLKIKLYSEGSKSRDPLEGIDHLDIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=72394 GYH29_RS23015 WP_043589323.1 4972651..4973787(-) (pilU) [Chromobacterium haemolyticum strain CH06-BL]
ATGGAAAAAGACCAGGCTTCCAAGTTCATACTGGATCTGCTGAAGCACGCCACCGGCAAGAACGCCTCCGACGTTTTCAT
CGCCGCCGATTTTCCGCCGGCGATGAAGATAGACGGCAAGATCACCCCGGTGGCGCCGCAGCCCCTGTCCGCCCAGCACA
CCAAGGAACTGGTGCGCGCGGTGATGAACGACCGGCAGACCGAGGAGTTCGAAACCAAGAAGGAGGCGAACTTCGCGATC
AACCCGCCGGGTCTGGGACGTTTCCGCGTCAGCGCCTATGTGCAGCAGGGCCATGCCGGCATGGTGTTGCGCAAGATAAA
CACTGAAATCCCCACCTTCGACCAGCTCAACCTGCCGCTGGTGCTGCGCGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGAGGCACCGGTTCAGGCAAATCCACCTCGCTGGCCGCGCTGGTGGACTGGCGCAATAGCCACAACCACGAC
CACATCATCACCATCGAAGATCCGATCGAATACGTGCATCAGCACAAGAAGTCCATCATCACCCAGCGCGAGGTGGGCGT
GGACACCGATGATTGGGACATCGCCTTGAAGAACACCTTGCGTCAAGCGCCGGACGTGATTCTGATGGGCGAGATTCGCG
ATCGCGAAACCATGGGTTATGGGCTGCAGTTCGCCGAAACCGGCCATTTGTGCCTGGCCACGCTGCATGCCAACAACGCC
AACCAGGCGCTGGACCGCATTCTCAACTTCTTCCCCGAAGAACGCCATCAGCAGGTGTTGATGGATCTGTCGCTGAATAT
GCGCTCCATCATCTCTCAGCGGCTGGTGCCGATCAAAAGCGGCCGCGGCCGGGTGGCGGCGGTGGAAATTCTGCTCAACA
GCCCGTTGGTGTCCGACATGATCTTCAAAGGCGAAATCGCCAGTCTGAAGGAGGTGATGGGCCGCTCGCGCGAGACCGGC
ATGCAGACCTTCGACCAGTCCTTGTTCGAGTTGTACGAAGCGGACCTGATCAGCTACGAGGACGCCCTGCGCAACGCCGA
CTCCATTAACGACCTGAGGCTGAAGATCAAGCTTTACAGCGAGGGTTCCAAGTCGCGCGACCCGCTGGAAGGCATAGACC
ACCTAGATATCGTCTAA
ATGGAAAAAGACCAGGCTTCCAAGTTCATACTGGATCTGCTGAAGCACGCCACCGGCAAGAACGCCTCCGACGTTTTCAT
CGCCGCCGATTTTCCGCCGGCGATGAAGATAGACGGCAAGATCACCCCGGTGGCGCCGCAGCCCCTGTCCGCCCAGCACA
CCAAGGAACTGGTGCGCGCGGTGATGAACGACCGGCAGACCGAGGAGTTCGAAACCAAGAAGGAGGCGAACTTCGCGATC
AACCCGCCGGGTCTGGGACGTTTCCGCGTCAGCGCCTATGTGCAGCAGGGCCATGCCGGCATGGTGTTGCGCAAGATAAA
CACTGAAATCCCCACCTTCGACCAGCTCAACCTGCCGCTGGTGCTGCGCGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGAGGCACCGGTTCAGGCAAATCCACCTCGCTGGCCGCGCTGGTGGACTGGCGCAATAGCCACAACCACGAC
CACATCATCACCATCGAAGATCCGATCGAATACGTGCATCAGCACAAGAAGTCCATCATCACCCAGCGCGAGGTGGGCGT
GGACACCGATGATTGGGACATCGCCTTGAAGAACACCTTGCGTCAAGCGCCGGACGTGATTCTGATGGGCGAGATTCGCG
ATCGCGAAACCATGGGTTATGGGCTGCAGTTCGCCGAAACCGGCCATTTGTGCCTGGCCACGCTGCATGCCAACAACGCC
AACCAGGCGCTGGACCGCATTCTCAACTTCTTCCCCGAAGAACGCCATCAGCAGGTGTTGATGGATCTGTCGCTGAATAT
GCGCTCCATCATCTCTCAGCGGCTGGTGCCGATCAAAAGCGGCCGCGGCCGGGTGGCGGCGGTGGAAATTCTGCTCAACA
GCCCGTTGGTGTCCGACATGATCTTCAAAGGCGAAATCGCCAGTCTGAAGGAGGTGATGGGCCGCTCGCGCGAGACCGGC
ATGCAGACCTTCGACCAGTCCTTGTTCGAGTTGTACGAAGCGGACCTGATCAGCTACGAGGACGCCCTGCGCAACGCCGA
CTCCATTAACGACCTGAGGCTGAAGATCAAGCTTTACAGCGAGGGTTCCAAGTCGCGCGACCCGCTGGAAGGCATAGACC
ACCTAGATATCGTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
61.032 |
92.328 |
0.563 |
| pilU | Acinetobacter baylyi ADP1 |
55.738 |
96.825 |
0.54 |
| pilU | Vibrio cholerae strain A1552 |
53.602 |
91.799 |
0.492 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.104 |
89.153 |
0.402 |
| pilT | Acinetobacter baylyi ADP1 |
41.003 |
89.683 |
0.368 |
| pilT | Pseudomonas aeruginosa PAK |
40.653 |
89.153 |
0.362 |