Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NUW46_RS03870 Genome accession   NZ_CP103058
Coordinates   841874..843940 (+) Length   688 a.a.
NCBI ID   WP_418141404.1    Uniprot ID   -
Organism   Marinobacter sp. MA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 836874..848940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW46_RS03850 (NUW46_03860) pilM 839022..840083 (+) 1062 WP_008170799.1 pilus assembly protein PilM Machinery gene
  NUW46_RS03855 (NUW46_03865) - 840083..840646 (+) 564 WP_088829301.1 PilN domain-containing protein -
  NUW46_RS03860 (NUW46_03870) - 840646..841257 (+) 612 WP_222466552.1 type 4a pilus biogenesis protein PilO -
  NUW46_RS03865 (NUW46_03875) - 841260..841808 (+) 549 WP_222466553.1 pilus assembly protein PilP -
  NUW46_RS03870 (NUW46_03880) pilQ 841874..843940 (+) 2067 WP_418141404.1 type IV pilus secretin PilQ Machinery gene
  NUW46_RS03875 (NUW46_03885) aroK 844077..844643 (+) 567 WP_418141405.1 shikimate kinase AroK -
  NUW46_RS03880 (NUW46_03890) aroB 844636..845730 (+) 1095 WP_418141406.1 3-dehydroquinate synthase -
  NUW46_RS03885 (NUW46_03895) - 845786..847270 (+) 1485 WP_418141407.1 AAA family ATPase -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 74059.98 Da        Isoelectric Point: 4.2758

>NTDB_id=721245 NUW46_RS03870 WP_418141404.1 841874..843940(+) (pilQ) [Marinobacter sp. MA]
MFRKLNVYVSVIAFGLLSGLANAVTLEDVSFSSLPGERLEVTLQFDGAPPEPSGYTIERPARIAVDLRDTTSGLDSRSVP
LGSGNAQSMTVVETKDRTRLIFNLVELVPYETVRSGNSLVMTIGGQAGAVATTSTSSSAQSSSATGTVSSNSLAGVDFRR
GKDGEGRVLVELGSSSTPVDLTERAGKIRLTMDGLEVPSNLRRRLDVTDFATPVTRIDTFVEDGNAVVEITPEGNYDYIA
YQSGSQFTVSVEELSQEEAESRREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNVPWDQA
LDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADIVALIKEDEELISDRGFVS
SDVRTNTISVRETAEKLDEIRRLVSTWDVPVRQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQQSLQEA
RDAAAGNSNTITFPGALAVDLGVTGEGASSFAIGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEEIP
YQEASSSGATSVSFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVGNGETVVLGGIFQSE
VATQTTKTPFLGDIPYLGRIFKRTEHIDERSELLIFITPKIIKNDLLR

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=721245 NUW46_RS03870 WP_418141404.1 841874..843940(+) (pilQ) [Marinobacter sp. MA]
ATGTTCAGAAAACTCAATGTATACGTCAGCGTGATTGCTTTTGGGTTGTTATCCGGCCTGGCCAACGCGGTCACGCTGGA
AGACGTGTCGTTTTCCTCGCTACCGGGCGAGCGGCTTGAAGTCACACTGCAATTTGATGGGGCGCCACCGGAACCCTCTG
GGTATACCATTGAGCGTCCTGCTCGCATTGCGGTTGACCTTCGAGACACGACCAGTGGCCTCGACAGCCGGAGCGTTCCG
CTCGGCTCAGGCAACGCCCAGAGTATGACCGTAGTAGAAACCAAGGATCGCACACGGTTGATTTTCAATCTGGTTGAGCT
GGTGCCTTACGAAACGGTCCGTTCGGGCAACTCCCTGGTTATGACGATTGGCGGGCAAGCCGGGGCTGTTGCTACTACGT
CCACCTCTTCTTCGGCTCAAAGCAGCTCAGCTACGGGTACGGTGTCCTCCAACTCTCTTGCCGGGGTGGATTTTCGCCGT
GGCAAGGATGGTGAAGGCCGGGTTCTTGTCGAGCTGGGCAGCTCCAGCACACCGGTGGATCTGACCGAACGTGCTGGCAA
GATCCGCTTGACGATGGATGGGCTTGAAGTTCCATCGAATCTGCGTCGCCGGCTCGATGTCACTGATTTCGCCACCCCGG
TTACCCGTATCGACACCTTTGTCGAGGATGGCAATGCCGTGGTCGAGATCACCCCAGAGGGCAATTACGACTACATTGCT
TACCAGTCCGGCAGCCAGTTTACTGTTAGTGTCGAGGAGCTGAGTCAGGAAGAGGCGGAGTCTCGCCGGGAAGAGAAGTT
CCCGTACACCGGTGACAAGTTGTCCCTGAACTTCCAGGATATTGAAGTGCGGTCGGTCCTGCAGTTGATTGCCGACTTCA
CCGGCCTGAACCTCGTGGCAAGTGACACTGTCGGCGGTAGCATCACTCTCCGCTTGCAGAATGTTCCCTGGGATCAGGCC
CTGGATCTGATCCTCAAGACCAAAGGCCTCGATAAACGTCAGATTGGCAACGTATTGCTGGTAGCGCCTGCCGATGAAAT
CGCGGCTCGCGAGAAGCTTGAGCTTGAGACGAACAAGCAAATCGCTGAACTGGCACCGGTCCGTCTCGACATTATTCAGG
TTAATTACGCCAAGGCGGCTGATATTGTTGCGTTGATCAAGGAAGACGAAGAGCTGATTTCCGATCGCGGCTTTGTCTCC
TCGGATGTGCGAACAAACACCATCAGCGTTCGTGAAACGGCCGAGAAACTTGACGAAATTCGCCGTCTGGTATCGACATG
GGACGTTCCGGTACGGCAGGTTTCTATCGAGGCCCGTATTGTGCGTGCGCAAACCAACGTTGCCGAGAACCTCGGTGTTC
GCTGGGGTGGCGCTGCTTACGATGTGAGTGGAGATAATGTATTTACCGTAGGTGGTTCGCAGCAATCTCTGCAGGAAGCG
CGGGACGCGGCTGCCGGAAACAGCAACACCATCACCTTCCCGGGCGCCCTTGCGGTTGACCTCGGCGTGACAGGTGAGGG
CGCATCGTCCTTCGCCATCGGCTGGGGCAGCGATGACTTCCTGGTGGACCTCGAGCTGTCGGCTCTCGAGAGCGATGGTC
AGGCCGAAGTGGTCTCCCAACCCCGCGTTGTGACTGCTGATCGCCAGACGGCGTCTATCAAGTCTGGTGAGGAAATTCCC
TACCAGGAAGCGTCTTCGAGCGGTGCTACTTCCGTTTCTTTCAAGGAGGCCGTGCTCTCCCTTGAAGTCACTCCGCAGAT
TACGCCGGATGACAAGATCATCATGGATCTTGTGGTCAACCAGGACTCCCGTGGTGAGGTGACTGCTGGTATTCCATCAA
TCAATACCAATGAAGTGACCACCCAGGTCCTGGTTGGCAATGGTGAGACAGTTGTTCTGGGCGGCATTTTCCAGTCGGAA
GTGGCGACTCAGACTACCAAGACGCCGTTCCTTGGAGATATCCCCTACCTGGGGCGTATTTTCAAGCGAACCGAGCATAT
TGATGAGCGCAGCGAGCTGCTGATCTTCATTACTCCGAAGATCATCAAGAACGACCTGCTTCGTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(371-433)

Secretin and TonB N terminus short domain (STN)

(297-343)

AMIN domain (AMIN)

(38-121)

Bacterial type II and III secretion system protein (Secretin)

(528-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.942

100

0.504
  pilQ Acinetobacter baumannii D1279779

40.327

100

0.43
  pilQ Acinetobacter baumannii strain A118

40.327

100

0.43
  comQ Acinetobacter baylyi ADP1

40.594

100

0.417
  pilQ Legionella pneumophila strain ERS1305867

40.533

98.256

0.398
  pilQ Legionella pneumophila strain Lp02

40.533

98.256

0.398