Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TEPE_RS11940 Genome accession   NZ_CP102984
Coordinates   2403561..2405324 (-) Length   587 a.a.
NCBI ID   WP_228107313.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain JCM 19845     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2398561..2410324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEPE_RS11915 - 2398717..2399175 (-) 459 WP_228107308.1 hypothetical protein -
  TEPE_RS11920 - 2399307..2399849 (-) 543 WP_228107309.1 NADH peroxidase -
  TEPE_RS11925 - 2399963..2401195 (-) 1233 WP_228107310.1 VanW family protein -
  TEPE_RS11930 - 2401301..2401792 (-) 492 WP_228107311.1 GNAT family N-acetyltransferase -
  TEPE_RS11935 - 2401968..2403308 (-) 1341 WP_228107312.1 protein kinase domain-containing protein -
  TEPE_RS11940 rcrQ 2403561..2405324 (-) 1764 WP_228107313.1 ABC transporter ATP-binding protein Regulator
  TEPE_RS11945 rcrP 2405317..2407086 (-) 1770 WP_228107314.1 ABC transporter ATP-binding protein Regulator
  TEPE_RS11950 - 2407279..2407956 (+) 678 WP_228107315.1 response regulator transcription factor -
  TEPE_RS11955 - 2407946..2409010 (+) 1065 WP_228107316.1 sensor histidine kinase -
  TEPE_RS11960 - 2409105..2409368 (-) 264 WP_416390184.1 transposase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64785.00 Da        Isoelectric Point: 6.0789

>NTDB_id=721070 TEPE_RS11940 WP_228107313.1 2403561..2405324(-) (rcrQ) [Terrisporobacter petrolearius strain JCM 19845]
MLNKNKQKSQGSLGNLLAYMKKYSFALILAFIFAIGGSIITVISPDKLSEVTNLIIKGIVVGINMDKISSICLTLAGLYG
VSVVLSYLQGFIMATITQKTTKELRSDISNKIDKLPLKYFDKTTVGDVLSRMTNDVDTIGQTLNQSIGTLVSGISLLLGS
LYMMTTTNRTLTITAVVSTVIGFGLMMLIISKSQKYFVNQQHYLGEINGHIEEAYTGHSVIKVYNAGEETNEKFKILNDN
LKQSAWKSQFISGLMMPLMAFIGNFGYVAVCVVGAVLAFNNKISFGVIVAFMMYIRFFTQPLAQFAQAATSLQSTSAACK
RVFEFLEEEEMEDESNKDISLENVEGHVKFEHVKFGYDKDKLIIKDFSADIKSGQKVAIVGPTGAGKTTLVNLLMKFYDV
NSGTIKIDEVPIQSLSREKVHDLFCMVLQDTWLFEGTIRENITYNKEDVSQSVIVSACKAVGVDHFIRTLPEGYDTVLDD
NTNLSAGQKQLITIARAMVKNAPLLILDEATSSVDTRTELLIQEAMDKLTVGKTSFVIAHRLSTIKNADVILVMKDGDII
ESGNHEELLSVNGFYAELYNSQFEKAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=721070 TEPE_RS11940 WP_228107313.1 2403561..2405324(-) (rcrQ) [Terrisporobacter petrolearius strain JCM 19845]
ATGCTTAATAAAAATAAACAAAAGTCACAAGGTAGCTTAGGCAACTTATTGGCGTATATGAAAAAATATAGTTTTGCATT
AATTTTAGCCTTTATATTTGCCATAGGTGGATCAATAATAACAGTTATAAGTCCAGACAAATTAAGTGAAGTTACTAATT
TGATTATAAAAGGAATAGTAGTTGGAATTAACATGGATAAGATATCTAGTATATGTTTAACATTAGCAGGGTTATATGGT
GTTAGTGTTGTGTTATCTTATTTGCAAGGTTTTATAATGGCAACAATAACACAAAAGACTACTAAAGAGTTAAGAAGTGA
TATATCTAATAAAATAGATAAATTACCATTAAAGTATTTTGATAAAACTACTGTTGGCGATGTTCTAAGCCGTATGACTA
ATGATGTAGATACAATAGGTCAAACTTTAAATCAAAGTATAGGGACTTTAGTAAGTGGAATATCCTTATTATTAGGTTCA
TTGTATATGATGACAACTACAAACAGAACTTTAACAATTACAGCAGTAGTATCTACAGTAATTGGCTTTGGATTAATGAT
GTTAATAATATCAAAATCTCAAAAATATTTTGTAAACCAACAACATTATCTTGGAGAAATAAATGGACATATAGAAGAAG
CTTATACTGGTCATAGTGTAATAAAAGTATATAATGCAGGTGAAGAAACAAATGAAAAGTTTAAAATACTAAATGATAAT
CTTAAACAAAGTGCATGGAAATCACAATTTATATCAGGTTTAATGATGCCTTTAATGGCCTTTATAGGCAACTTTGGATA
TGTGGCAGTTTGTGTTGTAGGTGCAGTATTAGCTTTCAATAATAAAATAAGTTTTGGTGTAATAGTAGCATTTATGATGT
ATATTAGATTTTTTACACAACCCCTTGCTCAATTTGCTCAAGCAGCCACTTCTCTACAGTCAACATCAGCTGCATGTAAA
CGAGTATTCGAGTTTTTAGAAGAAGAGGAAATGGAAGATGAAAGTAATAAAGACATATCTTTAGAAAATGTAGAAGGACA
TGTTAAATTTGAACATGTTAAGTTTGGATATGATAAAGATAAATTAATAATAAAAGATTTCTCTGCTGATATTAAATCAG
GACAAAAGGTTGCCATAGTAGGACCAACTGGAGCTGGTAAAACTACTTTAGTAAACTTATTAATGAAGTTTTACGATGTA
AATAGTGGAACAATAAAAATAGATGAAGTACCGATACAAAGTTTAAGTAGAGAAAAGGTACATGATTTATTCTGTATGGT
ACTTCAAGACACATGGTTGTTTGAAGGAACAATTAGAGAAAATATAACTTATAATAAAGAGGATGTGTCACAATCAGTAA
TAGTATCTGCTTGTAAAGCTGTTGGAGTAGATCATTTTATAAGAACTTTACCTGAAGGGTATGACACCGTATTAGATGAT
AATACTAATTTATCGGCTGGGCAAAAACAGTTAATTACTATAGCAAGAGCAATGGTGAAAAATGCACCTTTATTAATACT
AGATGAGGCAACAAGTTCTGTAGATACTCGTACAGAATTATTAATACAAGAGGCTATGGATAAATTAACAGTAGGAAAAA
CTTCATTTGTTATAGCTCATAGATTATCAACAATAAAAAACGCTGATGTAATTTTAGTTATGAAAGATGGAGATATTATA
GAAAGTGGAAATCATGAAGAACTTTTAAGTGTAAATGGATTCTATGCAGAACTTTATAATAGTCAATTTGAAAAAGCAAG
TTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(365-512)

ABC transporter transmembrane region (ABC_membrane)

(27-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.621

98.807

0.579