Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW971_RS08350 Genome accession   NZ_CP102962
Coordinates   1698308..1698994 (-) Length   228 a.a.
NCBI ID   WP_111762346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0212     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693308..1703994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW971_RS08330 (NW971_08330) rpsT 1694222..1694473 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW971_RS08335 (NW971_08335) holA 1694518..1695492 (-) 975 WP_258464285.1 DNA polymerase III subunit delta -
  NW971_RS08340 (NW971_08340) comEC 1695549..1697750 (-) 2202 WP_258464286.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW971_RS08345 (NW971_08345) - 1697755..1698216 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW971_RS08350 (NW971_08350) comEA 1698308..1698994 (-) 687 WP_111762346.1 ComEA family DNA-binding protein Machinery gene
  NW971_RS08355 (NW971_08355) - 1699034..1699750 (-) 717 WP_111762347.1 class I SAM-dependent methyltransferase -
  NW971_RS08360 (NW971_08360) rsfS 1699753..1700106 (-) 354 WP_001088020.1 ribosome silencing factor -
  NW971_RS08365 (NW971_08365) yqeK 1700107..1700691 (-) 585 WP_258464287.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW971_RS08370 (NW971_08370) nadD 1700681..1701250 (-) 570 WP_111762348.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW971_RS08375 (NW971_08375) yhbY 1701253..1701543 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  NW971_RS08380 (NW971_08380) aroE 1701547..1702353 (-) 807 WP_148843561.1 shikimate dehydrogenase -
  NW971_RS08385 (NW971_08385) yqeH 1702367..1703467 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25727.43 Da        Isoelectric Point: 9.6753

>NTDB_id=720630 NW971_RS08350 WP_111762346.1 1698308..1698994(-) (comEA) [Staphylococcus aureus strain 16CS0212]
MVLLYQILLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720630 NW971_RS08350 WP_111762346.1 1698308..1698994(-) (comEA) [Staphylococcus aureus strain 16CS0212]
GTGGTTTTATTGTATCAAATTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

98.238

99.561

0.978