Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NWE22_RS08460 Genome accession   NZ_CP102747
Coordinates   1659117..1661084 (-) Length   655 a.a.
NCBI ID   WP_239604205.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654117..1666084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS08440 (NWE22_08440) amiF 1654607..1655530 (-) 924 WP_239604202.1 ATP-binding cassette domain-containing protein Regulator
  NWE22_RS08445 (NWE22_08445) amiE 1655540..1656604 (-) 1065 WP_239604203.1 ABC transporter ATP-binding protein Regulator
  NWE22_RS08450 (NWE22_08450) amiD 1656614..1657540 (-) 927 WP_239604859.1 oligopeptide ABC transporter permease OppC Regulator
  NWE22_RS08455 (NWE22_08455) amiC 1657540..1659039 (-) 1500 WP_239604204.1 ABC transporter permease Regulator
  NWE22_RS08460 (NWE22_08460) amiA 1659117..1661084 (-) 1968 WP_239604205.1 peptide ABC transporter substrate-binding protein Regulator
  NWE22_RS08465 (NWE22_08465) pbp3 1661300..1662541 (+) 1242 WP_277745399.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  NWE22_RS08470 (NWE22_08470) sufB 1662981..1664396 (-) 1416 WP_277745400.1 Fe-S cluster assembly protein SufB -
  NWE22_RS08475 (NWE22_08475) sufU 1664577..1665017 (-) 441 WP_277745401.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72711.45 Da        Isoelectric Point: 4.2244

>NTDB_id=718709 NWE22_RS08460 WP_239604205.1 1659117..1661084(-) (amiA) [Streptococcus parasuis strain SFJ45]
MKRNKLFALAGITLLSASFLVACGSNSNSNSETSTTYSYVYTEDPTSLDYIAFNRQQVSDIVTNMVDGLLENDKFGNIIP
SLAEDWKVSKDGLTYTYTLREGVKWYTAEGEEYADVTANDFVTAIKHAVDTQSEGLYIIQDSIAGLDDYVNGKTSDFETV
GVKALDDRTVEYTLSHPEPYWNSKLTMSIMLPVNAEFLESKGEDFGKVEPDGILYNGAYFISAMTSKSSLEYTKNENYWD
ADNVKIENVKLTYYDGQDPESLVRGFTDGIYSNARVYPNSSSYSSVKEQYADNITYSLQDAVVYFTTLNLNRSNYGHTAK
TTDVQKESARKALLNKDFRQALTFAFNRQDYLAQSVGEDAADKPLRNLMVPPTFVSAGEKSFGDLVSEKVISYGDEWADV
DFSDAQNGLYNVDKAKVEFEKAKQTLSAEGVEFPIHLDMPVNQSSEVSTQQAASLKQSVEAALGTENIVIDLQMMDTDTF
TNAAFYTETPDQNDYDITYSGWGPDYQDPSTYLDILETTSGAMTSKLGVDSSTTDVIKTVGLDKYDALLKEASDEKLDVV
KRYEKYAEAQAWLTDSAIVIPYMSLGGSPSVSKVIPYTASVSDIGIKGGGSFYKYMEVGTEVNKAEDVYAKREKWLKEKA
ESNAKAQEKLANHVE

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=718709 NWE22_RS08460 WP_239604205.1 1659117..1661084(-) (amiA) [Streptococcus parasuis strain SFJ45]
ATGAAACGAAATAAATTGTTTGCATTAGCAGGAATCACTCTGCTGTCAGCCTCGTTCTTGGTTGCATGTGGTTCAAATTC
TAACTCAAATTCTGAAACTAGTACAACTTATTCTTATGTTTATACTGAAGATCCAACTTCTTTAGATTACATTGCTTTTA
ACCGTCAACAAGTTTCTGATATTGTTACTAATATGGTGGATGGTTTGTTAGAGAATGACAAGTTCGGTAACATAATCCCC
TCTCTTGCTGAAGATTGGAAGGTTTCAAAAGATGGTTTAACATATACTTATACTCTTCGTGAGGGCGTAAAATGGTATAC
AGCTGAAGGTGAAGAATATGCTGACGTGACAGCAAATGACTTTGTAACAGCTATTAAACATGCTGTGGATACACAGTCTG
AAGGTTTATATATTATCCAAGATTCAATTGCAGGTTTAGATGACTATGTTAACGGTAAAACAAGTGACTTTGAAACTGTT
GGTGTTAAGGCTTTAGATGACCGTACTGTTGAGTATACTTTGAGCCATCCAGAACCATATTGGAACTCAAAGTTAACCAT
GTCAATCATGTTGCCTGTAAATGCGGAATTCTTAGAATCAAAAGGTGAGGACTTTGGTAAAGTAGAGCCAGATGGAATTC
TTTACAATGGTGCATACTTTATTAGTGCAATGACATCTAAATCTTCACTTGAATATACAAAGAATGAAAACTACTGGGAT
GCTGACAATGTTAAAATTGAGAATGTTAAGTTAACATATTATGATGGGCAAGATCCAGAATCTTTGGTAAGGGGCTTCAC
GGATGGAATCTATTCTAATGCTCGAGTATATCCAAATTCTTCTAGCTATTCATCTGTTAAAGAGCAATATGCTGATAACA
TCACTTATAGCCTTCAAGATGCAGTAGTATATTTCACTACTTTGAACTTAAATCGTTCAAACTATGGTCATACTGCAAAA
ACAACAGATGTTCAGAAAGAATCAGCTAGAAAAGCATTATTAAATAAAGATTTTCGTCAAGCCTTAACTTTCGCATTTAA
CCGCCAAGATTACTTAGCACAATCAGTTGGTGAGGACGCTGCAGATAAGCCATTACGCAACTTGATGGTTCCTCCTACTT
TTGTAAGTGCAGGCGAAAAATCATTTGGTGATTTAGTAAGTGAAAAAGTAATTTCATATGGAGATGAGTGGGCAGATGTA
GATTTTTCTGACGCTCAAAATGGTCTTTACAATGTTGATAAGGCAAAAGTTGAATTTGAAAAAGCAAAACAAACTCTTTC
TGCTGAAGGTGTTGAATTCCCTATTCACTTAGATATGCCGGTTAACCAAAGTAGTGAGGTTAGTACACAACAAGCTGCTT
CTTTGAAACAGTCTGTTGAAGCAGCATTGGGCACTGAAAATATTGTAATTGATCTTCAGATGATGGATACAGATACGTTT
ACAAACGCAGCTTTCTACACTGAAACACCGGATCAAAATGATTATGACATTACATACAGTGGATGGGGTCCTGACTACCA
AGATCCGTCTACCTACCTTGATATATTAGAAACAACATCTGGTGCGATGACTAGCAAGTTGGGTGTTGATTCAAGTACGA
CTGATGTGATTAAAACAGTTGGGCTAGACAAATACGACGCGCTTCTTAAAGAAGCTTCTGATGAAAAACTTGATGTTGTA
AAACGATATGAAAAATATGCCGAAGCTCAAGCTTGGTTAACTGATAGCGCGATTGTAATCCCGTATATGTCATTAGGCGG
TTCTCCTAGTGTATCTAAGGTTATTCCTTACACAGCATCTGTGTCTGATATTGGTATCAAAGGCGGTGGCTCATTCTACA
AATATATGGAAGTGGGCACTGAAGTAAACAAGGCAGAAGATGTTTATGCTAAGCGTGAAAAATGGTTAAAAGAAAAAGCT
GAGTCAAATGCTAAAGCGCAAGAAAAACTTGCTAACCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.788

100

0.542
  amiA3 Streptococcus thermophilus LMD-9

53.182

100

0.536
  amiA3 Streptococcus thermophilus LMG 18311

53.03

100

0.534