Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   NWE22_RS08445 Genome accession   NZ_CP102747
Coordinates   1655540..1656604 (-) Length   354 a.a.
NCBI ID   WP_239604203.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650540..1661604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS08430 (NWE22_08430) thrC 1651467..1652951 (-) 1485 WP_239604201.1 threonine synthase -
  NWE22_RS08435 (NWE22_08435) - 1653161..1654512 (+) 1352 WP_096811962.1 IS3 family transposase -
  NWE22_RS08440 (NWE22_08440) amiF 1654607..1655530 (-) 924 WP_239604202.1 ATP-binding cassette domain-containing protein Regulator
  NWE22_RS08445 (NWE22_08445) amiE 1655540..1656604 (-) 1065 WP_239604203.1 ABC transporter ATP-binding protein Regulator
  NWE22_RS08450 (NWE22_08450) amiD 1656614..1657540 (-) 927 WP_239604859.1 oligopeptide ABC transporter permease OppC Regulator
  NWE22_RS08455 (NWE22_08455) amiC 1657540..1659039 (-) 1500 WP_239604204.1 ABC transporter permease Regulator
  NWE22_RS08460 (NWE22_08460) amiA 1659117..1661084 (-) 1968 WP_239604205.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39445.35 Da        Isoelectric Point: 4.8911

>NTDB_id=718706 NWE22_RS08445 WP_239604203.1 1655540..1656604(-) (amiE) [Streptococcus parasuis strain SFJ45]
MAEKNNVILSAKDVVVEFEVRDRVLTAIRNVSIDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRIASGSIIYRGEEL
TDIKKHEEWEKIRGAKIATIFQDPMTSLNPLVTIGRQITEVIIKHQGKSISEAKELAVNYMERVGIPDAKKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQILDLLKELQKEYNFTTIFITHDLGVVASIADKVAVMYAGEVIE
FGTVEDIFYDPRHPYTWSLLSSLPQLANSNGELFSIPGTPPSLFTPVLGDAFAPRSEFAMQVDFEESPPIFQVTENHWAK
TWLLHPEAPKAAKPEVIQDLHSKIKSKMSVEDIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=718706 NWE22_RS08445 WP_239604203.1 1655540..1656604(-) (amiE) [Streptococcus parasuis strain SFJ45]
ATGGCAGAAAAAAACAATGTAATATTATCCGCAAAAGATGTGGTCGTGGAATTTGAAGTTCGTGACCGTGTTTTGACAGC
TATACGTAATGTCTCTATTGATTTAATCGAGGGAGAGGTTCTCGCAATTGTAGGGGAGTCTGGTTCTGGAAAGTCAGTTT
TGACAAAAACTTTCACAGGGATGCTGGAAGAGAATGGTCGAATTGCTTCAGGAAGTATTATTTATCGTGGAGAAGAATTA
ACTGATATAAAAAAACATGAAGAATGGGAAAAAATACGTGGTGCAAAAATTGCAACTATTTTCCAGGATCCAATGACAAG
TCTTAATCCTTTGGTTACAATTGGCCGCCAAATTACCGAAGTTATCATTAAACATCAAGGAAAATCAATTTCTGAGGCAA
AAGAACTTGCGGTTAATTATATGGAACGAGTGGGTATTCCAGATGCAAAAAAACGTTTCAATGAATACCCGTTTCAATAT
TCAGGTGGTATGCGACAAAGAATTGTTATTGCAATTGCCTTAGCATGCCGTCCAGATGTATTAATTTGTGATGAACCAAC
AACAGCATTAGATGTAACAATACAAGCTCAAATTTTAGACTTATTAAAAGAATTACAAAAAGAATACAATTTTACAACAA
TTTTCATCACGCATGATTTGGGTGTTGTTGCAAGCATCGCTGACAAAGTTGCTGTTATGTATGCTGGCGAAGTTATTGAA
TTTGGAACCGTAGAAGACATCTTTTATGACCCTCGACATCCATATACATGGAGTCTACTTTCAAGTCTTCCTCAGTTAGC
CAATTCTAATGGAGAACTCTTTTCAATTCCAGGAACACCTCCTTCACTTTTCACTCCGGTCTTAGGAGATGCATTTGCAC
CTCGTTCTGAATTCGCGATGCAGGTTGATTTTGAAGAATCTCCACCTATTTTTCAAGTTACAGAAAATCATTGGGCTAAA
ACTTGGTTATTACACCCTGAAGCTCCTAAAGCGGCCAAACCAGAAGTGATTCAGGATTTACATTCAAAAATTAAATCTAA
GATGTCAGTAGAAGATATTAAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.51

98.588

0.774
  amiE Streptococcus thermophilus LMG 18311

78.223

98.588

0.771
  amiE Streptococcus thermophilus LMD-9

78.223

98.588

0.771
  oppD Streptococcus mutans UA159

56.047

95.763

0.537