Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NWE22_RS08450 Genome accession   NZ_CP102747
Coordinates   1656614..1657540 (-) Length   308 a.a.
NCBI ID   WP_239604859.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1651614..1662540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS08435 (NWE22_08435) - 1653161..1654512 (+) 1352 WP_096811962.1 IS3 family transposase -
  NWE22_RS08440 (NWE22_08440) amiF 1654607..1655530 (-) 924 WP_239604202.1 ATP-binding cassette domain-containing protein Regulator
  NWE22_RS08445 (NWE22_08445) amiE 1655540..1656604 (-) 1065 WP_239604203.1 ABC transporter ATP-binding protein Regulator
  NWE22_RS08450 (NWE22_08450) amiD 1656614..1657540 (-) 927 WP_239604859.1 oligopeptide ABC transporter permease OppC Regulator
  NWE22_RS08455 (NWE22_08455) amiC 1657540..1659039 (-) 1500 WP_239604204.1 ABC transporter permease Regulator
  NWE22_RS08460 (NWE22_08460) amiA 1659117..1661084 (-) 1968 WP_239604205.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34703.72 Da        Isoelectric Point: 9.5615

>NTDB_id=718707 NWE22_RS08450 WP_239604859.1 1656614..1657540(-) (amiD) [Streptococcus parasuis strain SFJ45]
MSTIDKSKFQFVKRDDFAAEVIDTPAYSYWNSVFRQFLKKKSTIVMLIILVAIVLMSFIYPIFANYDFNDVSKINDFSAR
YNWPNAEYWFGTDANGQSLFDGVWYGARNSILIALIATVINLVVGVILGGIWGVSKTFDKIMMEIYNVISNIPSLMIFIV
MSYALGAGFWNLILAFCLTGWIGVAFSIRIQIMRYRDLEYNLASRTLGTPTFKLVVKNLLPQLVSVIVTQASQSLPSYIS
MEAFLSYFGIGLPVTTPSLGRLLSKYAQNVTTKPYLFWIPLTALILVSLSLFIVGQNLSDASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=718707 NWE22_RS08450 WP_239604859.1 1656614..1657540(-) (amiD) [Streptococcus parasuis strain SFJ45]
ATGTCAACAATTGATAAAAGTAAATTTCAATTTGTAAAACGTGATGATTTTGCCGCGGAGGTAATTGACACACCTGCCTA
CTCATATTGGAATTCTGTATTTCGACAGTTTCTAAAGAAAAAATCAACCATTGTAATGTTAATTATTTTGGTAGCCATCG
TCCTTATGAGTTTTATTTATCCCATTTTTGCAAATTATGATTTCAATGATGTAAGTAAAATTAATGATTTCAGCGCTCGT
TATAATTGGCCAAATGCCGAGTATTGGTTCGGAACTGATGCAAATGGACAGTCTCTATTTGATGGGGTTTGGTATGGAGC
AAGAAATTCAATTTTGATTGCACTTATTGCGACTGTTATTAACCTTGTTGTTGGTGTCATCCTTGGGGGAATCTGGGGTG
TATCAAAGACTTTTGATAAAATAATGATGGAAATTTACAATGTCATATCAAATATTCCATCACTAATGATTTTTATTGTA
ATGTCATATGCTCTTGGAGCTGGCTTCTGGAATTTGATATTAGCATTTTGTTTAACAGGATGGATTGGTGTAGCGTTTTC
AATCCGGATCCAGATTATGAGATATCGGGATTTGGAATATAATTTGGCTAGTCGCACGCTCGGTACTCCAACTTTTAAAT
TAGTAGTAAAAAACCTATTGCCACAATTGGTATCTGTGATAGTAACACAAGCCTCACAAAGTTTACCAAGCTATATTTCA
ATGGAGGCCTTCCTTTCATACTTTGGAATAGGGCTCCCTGTGACAACACCAAGTTTAGGTCGACTGCTTTCTAAATATGC
TCAAAATGTGACAACCAAACCATACTTGTTTTGGATTCCTTTAACAGCGTTAATCTTAGTTTCGCTATCACTCTTCATTG
TTGGACAAAATTTGTCTGATGCAAGTGACCCACGTACACATAGATAA

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.273

100

0.773
  amiD Streptococcus thermophilus LMG 18311

75.649

100

0.756
  amiD Streptococcus thermophilus LMD-9

75.649

100

0.756