Detailed information NTG0718705

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: NWE22_RS08440
• Genome accession: NZ_CP102747
• Coordinates: 1654607..1655530 (-)
• Length: 307 a.a.
• NCBI ID: WP_239604202.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SFJ45
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1653673..1654512	1654607..1655530	flank	95

Gene organization within MGE regions

Location: 1653673..1655530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NWE22_RS08440 (NWE22_08440)	amiF	1654607..1655530 (-)	924	WP_239604202.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34649.85 Da
• Isoelectric Point: 6.7820

>NTDB_id=718705 NWE22_RS08440 WP_239604202.1 1654607..1655530(-) (amiF) [Streptococcus parasuis strain SFJ45]
MTEKLVEIKDLEISFGEGRKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSGGDILYNGEKINGKISHE
KSRELIKKIQMIFQDPAASLNERATVDYIISEGLYNFKLFNNEEERQAKVRSMMTEVGLLAEHLTRFPHEFSGGQRQRIG
IARALVMNPELVIADEPISALDVSVRAQVLNLLKRLQKELGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFK
NPLHPYTRSLLSAVPIPDPILERQKTLVVYDPNMHDYSVDRPEMHEIKPGHFVWSNKAEFAKYSEGI

Nucleotide

• Length: 924 bp

>NTDB_id=718705 NWE22_RS08440 WP_239604202.1 1654607..1655530(-) (amiF) [Streptococcus parasuis strain SFJ45]
ATGACTGAAAAATTAGTTGAAATCAAAGATTTAGAAATTTCTTTCGGTGAAGGGCGCAAAAAATTTGTAGCTGTCAAAAA
TGCTAATTTCTTTATTAATCGTGGAGAAACATTCTCCTTAGTTGGAGAATCGGGGTCTGGTAAGACAACGATTGGTCGTG
CGATAATTGGACTAAATGAAACAAGTGGTGGAGATATTCTTTACAATGGAGAGAAAATAAATGGGAAAATTTCTCATGAG
AAGTCTCGAGAATTAATTAAGAAAATTCAAATGATTTTTCAAGATCCAGCTGCGAGTTTGAATGAACGTGCAACAGTAGA
CTATATTATCTCTGAGGGCTTGTACAATTTTAAATTGTTTAATAATGAAGAAGAGCGGCAAGCAAAAGTTCGGTCAATGA
TGACAGAAGTGGGGCTACTTGCGGAACACTTAACACGCTTTCCTCATGAGTTCTCAGGAGGCCAACGCCAGAGGATAGGT
ATAGCTCGAGCACTTGTGATGAATCCTGAATTGGTGATTGCCGATGAACCGATTTCTGCATTAGATGTGTCTGTTAGAGC
TCAAGTCTTAAATTTATTGAAGAGATTGCAAAAAGAACTGGGCTTAACTTATCTCTTTATTGCACATGATTTGTCAGTTG
TTCGGTTTATTTCTGATAGGATTGCAGTGATTCATAAAGGTGTTATTGTAGAAGTGGCAGAGACAGAGGAATTGTTTAAG
AATCCTTTGCATCCATACACTCGTTCCTTACTATCTGCTGTTCCTATTCCGGATCCAATTTTAGAAAGACAAAAAACTTT
AGTAGTATATGACCCAAATATGCATGATTATTCTGTAGATAGGCCAGAAATGCATGAAATCAAGCCAGGCCATTTTGTAT
GGTCAAATAAAGCAGAATTTGCAAAATATTCAGAAGGCATATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	80.528	98.697	0.795
amiF	Streptococcus thermophilus LMD-9	80.198	98.697	0.792
amiF	Streptococcus salivarius strain HSISS4	79.868	98.697	0.788