Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   NWE22_RS08455 Genome accession   NZ_CP102747
Coordinates   1657540..1659039 (-) Length   499 a.a.
NCBI ID   WP_239604204.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652540..1664039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS08435 (NWE22_08435) - 1653161..1654512 (+) 1352 WP_096811962.1 IS3 family transposase -
  NWE22_RS08440 (NWE22_08440) amiF 1654607..1655530 (-) 924 WP_239604202.1 ATP-binding cassette domain-containing protein Regulator
  NWE22_RS08445 (NWE22_08445) amiE 1655540..1656604 (-) 1065 WP_239604203.1 ABC transporter ATP-binding protein Regulator
  NWE22_RS08450 (NWE22_08450) amiD 1656614..1657540 (-) 927 WP_239604859.1 oligopeptide ABC transporter permease OppC Regulator
  NWE22_RS08455 (NWE22_08455) amiC 1657540..1659039 (-) 1500 WP_239604204.1 ABC transporter permease Regulator
  NWE22_RS08460 (NWE22_08460) amiA 1659117..1661084 (-) 1968 WP_239604205.1 peptide ABC transporter substrate-binding protein Regulator
  NWE22_RS08465 (NWE22_08465) pbp3 1661300..1662541 (+) 1242 WP_277745399.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56507.26 Da        Isoelectric Point: 7.4890

>NTDB_id=718708 NWE22_RS08455 WP_239604204.1 1657540..1659039(-) (amiC) [Streptococcus parasuis strain SFJ45]
MKKYVFKRVLRSLFSLFMVTTLIYSIIYTMVPRKKIFEKDATYTKMAKDPDSKTDYVNTVYEKMGYIEYLNPKELQEATV
EVDSSVTVEPTDTNKKIYEEYVVELGKNWVLHQFEGSQSFYATREIPIYERVIDFYGNMFEFDHINKVQDPENPDLERYI
RFENDPAIGWSLVGSGTEHKYLLYFNSQFPFIHQNFVNLNLGVSYPTYANVEVLDVLTNGQGKTNSTDVTFPTGEVKKSS
INIYSRTYKSPSVADAKDKANFGDDPYTATKSRYKDPSMIVNSSIIGLISVFITYILGIPLGILMARFKNRGFDVVTTAI
FSFLMALPSLAFIYIFRFAFGQIFNLPDTFPVLGASDPRSYLFPAVLLGLLSTPWTAIWIRRYFIDLQNSDYVRFARAKG
LSESEISRTHIFRNAMVPVIHSVPAAIVGVIVGATLTESVFAFPGMGKMLIDSINVSNNSMVVALSFIFAGINIFALLLG
DILMTLVDPRIKLDVKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=718708 NWE22_RS08455 WP_239604204.1 1657540..1659039(-) (amiC) [Streptococcus parasuis strain SFJ45]
ATGAAAAAGTATGTTTTCAAACGTGTCCTACGTTCGTTATTCTCTCTTTTTATGGTTACCACTTTGATCTATTCGATCAT
TTATACAATGGTTCCTAGAAAGAAAATTTTTGAAAAGGATGCGACATACACTAAAATGGCTAAGGATCCGGACAGTAAGA
CTGACTATGTCAATACTGTCTATGAGAAAATGGGTTATATTGAATATCTAAATCCTAAAGAGTTACAAGAAGCAACTGTT
GAGGTTGATAGTAGTGTGACTGTAGAACCTACAGATACTAATAAAAAAATATACGAAGAGTATGTCGTCGAGCTAGGAAA
AAACTGGGTACTTCATCAATTTGAGGGAAGCCAGTCTTTTTATGCGACTCGAGAAATACCGATTTATGAGCGAGTAATTG
ATTTCTATGGAAATATGTTCGAGTTTGATCATATCAATAAGGTTCAAGACCCGGAAAATCCTGATTTAGAACGTTACATT
CGCTTTGAAAATGATCCTGCAATTGGTTGGTCACTTGTGGGTTCTGGGACTGAACATAAGTATCTGCTTTACTTTAACTC
ACAATTTCCATTTATTCATCAAAATTTTGTCAATCTAAACCTTGGTGTATCCTATCCAACATATGCAAATGTTGAAGTAC
TTGACGTTTTAACAAATGGTCAGGGGAAAACAAACTCAACAGATGTGACTTTCCCAACTGGTGAAGTAAAGAAATCGTCT
ATTAATATCTATAGCAGAACCTATAAGTCACCGAGTGTTGCAGATGCCAAGGATAAAGCAAATTTTGGAGATGATCCATA
TACTGCAACAAAGAGTCGATATAAAGATCCATCTATGATAGTCAACTCTTCAATAATTGGGCTAATTAGTGTATTTATAA
CATATATACTTGGTATTCCATTGGGAATACTTATGGCAAGATTTAAAAATAGAGGTTTTGATGTTGTTACAACAGCGATT
TTTAGTTTCCTAATGGCACTTCCTAGTCTTGCATTCATTTATATATTCAGATTTGCTTTTGGTCAGATTTTTAATCTACC
TGATACTTTTCCAGTCCTTGGTGCTTCTGATCCGAGGTCATACCTATTTCCTGCTGTTTTATTAGGATTATTAAGTACAC
CTTGGACAGCAATTTGGATACGTCGTTACTTTATTGATTTACAAAATAGCGATTATGTGCGTTTTGCAAGAGCGAAAGGA
TTATCTGAATCTGAAATTTCACGAACACATATTTTTAGAAATGCGATGGTCCCAGTTATTCATAGTGTACCAGCAGCGAT
TGTTGGTGTAATTGTTGGGGCAACACTTACTGAATCAGTATTTGCATTTCCTGGGATGGGTAAAATGTTGATTGATTCAA
TTAACGTTAGCAATAATAGCATGGTAGTTGCATTATCATTTATATTTGCAGGTATCAATATTTTTGCGCTATTATTGGGT
GATATATTAATGACTTTAGTTGATCCACGAATAAAACTTGATGTGAAAGGGGGCAAATGA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

63.928

100

0.639
  amiC Streptococcus thermophilus LMG 18311

63.126

100

0.631
  amiC Streptococcus thermophilus LMD-9

62.725

100

0.627