Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NHB23_RS09725 | Genome accession | NZ_CP102716 |
| Coordinates | 2115150..2115587 (-) | Length | 145 a.a. |
| NCBI ID | WP_049179754.1 | Uniprot ID | A0A853J726 |
| Organism | Lacticaseibacillus rhamnosus strain DM065 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2081676..2123001 | 2115150..2115587 | within | 0 |
Gene organization within MGE regions
Location: 2081676..2123001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHB23_RS09510 (NHB23_009510) | - | 2081676..2082848 (-) | 1173 | WP_049179690.1 | GH25 family lysozyme | - |
| NHB23_RS09515 (NHB23_009515) | - | 2082859..2083308 (-) | 450 | WP_049179692.1 | phage holin | - |
| NHB23_RS09520 (NHB23_009520) | - | 2083323..2083622 (-) | 300 | WP_308706291.1 | hypothetical protein | - |
| NHB23_RS09525 (NHB23_009525) | - | 2083654..2083797 (-) | 144 | WP_005688592.1 | XkdX family protein | - |
| NHB23_RS09530 (NHB23_009530) | - | 2083794..2084123 (-) | 330 | WP_049179694.1 | hypothetical protein | - |
| NHB23_RS09535 (NHB23_009535) | - | 2084139..2087093 (-) | 2955 | WP_049179695.1 | phage tail protein | - |
| NHB23_RS09540 (NHB23_009540) | - | 2087094..2089007 (-) | 1914 | WP_049179698.1 | distal tail protein Dit | - |
| NHB23_RS09545 (NHB23_009545) | - | 2089008..2093870 (-) | 4863 | WP_049179700.1 | phage tail tape measure protein | - |
| NHB23_RS09550 (NHB23_009550) | gpG | 2093993..2094406 (-) | 414 | WP_049179703.1 | phage tail assembly chaperone G | - |
| NHB23_RS09555 (NHB23_009555) | - | 2094477..2094662 (-) | 186 | WP_049179705.1 | Ig-like domain-containing protein | - |
| NHB23_RS09560 (NHB23_009560) | - | 2094719..2095339 (-) | 621 | WP_049179707.1 | major tail protein | - |
| NHB23_RS09565 (NHB23_009565) | - | 2095373..2095759 (-) | 387 | WP_016389063.1 | hypothetical protein | - |
| NHB23_RS09570 (NHB23_009570) | - | 2095759..2096145 (-) | 387 | WP_049179710.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| NHB23_RS09575 (NHB23_009575) | - | 2096145..2096474 (-) | 330 | WP_049179711.1 | head-tail adaptor protein | - |
| NHB23_RS09580 (NHB23_009580) | - | 2096464..2096823 (-) | 360 | WP_049179713.1 | head-tail connector protein | - |
| NHB23_RS09585 (NHB23_009585) | - | 2096834..2097073 (-) | 240 | WP_049179716.1 | Ig-like domain-containing protein | - |
| NHB23_RS09590 (NHB23_009590) | - | 2097091..2098293 (-) | 1203 | WP_049179718.1 | phage major capsid protein | - |
| NHB23_RS09595 (NHB23_009595) | - | 2098335..2098964 (-) | 630 | WP_049179720.1 | HK97 family phage prohead protease | - |
| NHB23_RS09600 (NHB23_009600) | - | 2098918..2100171 (-) | 1254 | WP_049179722.1 | phage portal protein | - |
| NHB23_RS09605 (NHB23_009605) | - | 2100177..2100368 (-) | 192 | WP_003661399.1 | hypothetical protein | - |
| NHB23_RS09610 (NHB23_009610) | - | 2100380..2102092 (-) | 1713 | WP_032953807.1 | terminase large subunit | - |
| NHB23_RS09615 (NHB23_009615) | - | 2102114..2102569 (-) | 456 | WP_005686963.1 | P27 family phage terminase small subunit | - |
| NHB23_RS09620 (NHB23_009620) | - | 2102770..2103564 (-) | 795 | WP_049179724.1 | HNH endonuclease | - |
| NHB23_RS09625 (NHB23_009625) | - | 2103767..2104090 (-) | 324 | WP_049179727.1 | ribonucleoside-diphosphate reductase | - |
| NHB23_RS09630 (NHB23_009630) | - | 2104087..2104632 (-) | 546 | WP_049179729.1 | NUMOD4 domain-containing protein | - |
| NHB23_RS09635 (NHB23_009635) | - | 2104625..2105773 (-) | 1149 | WP_049179731.1 | GcrA family cell cycle regulator | - |
| NHB23_RS09640 (NHB23_009640) | - | 2106314..2107174 (-) | 861 | WP_005686948.1 | hypothetical protein | - |
| NHB23_RS09645 (NHB23_009645) | - | 2107462..2107905 (-) | 444 | WP_005714759.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| NHB23_RS09650 (NHB23_009650) | - | 2108347..2108529 (-) | 183 | WP_048488379.1 | hypothetical protein | - |
| NHB23_RS09655 (NHB23_009655) | - | 2108579..2108818 (-) | 240 | WP_014569479.1 | hypothetical protein | - |
| NHB23_RS09660 (NHB23_009660) | - | 2108863..2109051 (-) | 189 | WP_005688546.1 | hypothetical protein | - |
| NHB23_RS09665 (NHB23_009665) | - | 2109048..2109326 (-) | 279 | WP_373418399.1 | hypothetical protein | - |
| NHB23_RS09670 (NHB23_009670) | - | 2109355..2109531 (-) | 177 | WP_175265236.1 | hypothetical protein | - |
| NHB23_RS09675 (NHB23_009675) | - | 2109521..2110051 (-) | 531 | WP_049179739.1 | DUF1642 domain-containing protein | - |
| NHB23_RS09680 (NHB23_009680) | - | 2110048..2110230 (-) | 183 | WP_048488361.1 | hypothetical protein | - |
| NHB23_RS09685 (NHB23_009685) | - | 2110227..2110934 (-) | 708 | WP_049179741.1 | N-6 DNA methylase | - |
| NHB23_RS09690 (NHB23_009690) | - | 2110927..2111778 (-) | 852 | WP_032964565.1 | DNA cytosine methyltransferase | - |
| NHB23_RS09695 (NHB23_009695) | - | 2111792..2112157 (-) | 366 | WP_016364507.1 | hypothetical protein | - |
| NHB23_RS09700 (NHB23_009700) | - | 2112154..2112408 (-) | 255 | WP_049179744.1 | hypothetical protein | - |
| NHB23_RS09705 (NHB23_009705) | - | 2112395..2112682 (-) | 288 | WP_049179746.1 | hypothetical protein | - |
| NHB23_RS09710 (NHB23_009710) | - | 2112695..2113039 (-) | 345 | WP_049179748.1 | hypothetical protein | - |
| NHB23_RS09715 (NHB23_009715) | - | 2113041..2114303 (-) | 1263 | WP_049179750.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| NHB23_RS09720 (NHB23_009720) | - | 2114300..2115133 (-) | 834 | WP_049179752.1 | helix-turn-helix domain-containing protein | - |
| NHB23_RS09725 (NHB23_009725) | ssb | 2115150..2115587 (-) | 438 | WP_049179754.1 | single-stranded DNA-binding protein | Machinery gene |
| NHB23_RS09730 (NHB23_009730) | - | 2115602..2116270 (-) | 669 | WP_080980177.1 | putative HNHc nuclease | - |
| NHB23_RS09735 (NHB23_009735) | - | 2116273..2117028 (-) | 756 | WP_049179756.1 | ERF family protein | - |
| NHB23_RS09740 (NHB23_009740) | - | 2117028..2117915 (-) | 888 | WP_049179759.1 | DUF1351 domain-containing protein | - |
| NHB23_RS09745 (NHB23_009745) | - | 2117933..2118136 (-) | 204 | WP_049179761.1 | hypothetical protein | - |
| NHB23_RS09750 (NHB23_009750) | - | 2118378..2118734 (-) | 357 | WP_049179763.1 | DUF771 domain-containing protein | - |
| NHB23_RS09755 (NHB23_009755) | - | 2118813..2118962 (-) | 150 | WP_180530720.1 | hypothetical protein | - |
| NHB23_RS09760 (NHB23_009760) | - | 2118959..2119777 (-) | 819 | WP_049179765.1 | ORF6N domain-containing protein | - |
| NHB23_RS09765 (NHB23_009765) | - | 2119802..2120029 (-) | 228 | WP_049179767.1 | hypothetical protein | - |
| NHB23_RS09770 (NHB23_009770) | - | 2120193..2120969 (+) | 777 | WP_049179769.1 | XRE family transcriptional regulator | - |
| NHB23_RS09775 (NHB23_009775) | - | 2121024..2121701 (+) | 678 | WP_049179771.1 | tcdA-E operon negative regulator | - |
| NHB23_RS09780 (NHB23_009780) | - | 2121874..2123001 (+) | 1128 | WP_049179772.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15906.53 Da Isoelectric Point: 5.7223
>NTDB_id=718543 NHB23_RS09725 WP_049179754.1 2115150..2115587(-) (ssb) [Lacticaseibacillus rhamnosus strain DM065]
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQKVFVTEVIVENFALLEPRQASQDGQQRSANNPAAASQGNSFANNGQPVDIRDDDLPF
MLNSVALTGRLTKPVDLRYTQSGTAVGSFTIAVDRQFRSANGERETDFINCAIWRKSAENFANFTHKGSLVGIEGHIQTR
TYDNAQGQKVFVTEVIVENFALLEPRQASQDGQQRSANNPAAASQGNSFANNGQPVDIRDDDLPF
Nucleotide
Download Length: 438 bp
>NTDB_id=718543 NHB23_RS09725 WP_049179754.1 2115150..2115587(-) (ssb) [Lacticaseibacillus rhamnosus strain DM065]
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGACCTTCGCTACACACAAAGCGGAACGGCAGTTGG
TTCATTTACGATTGCTGTTGATCGCCAATTTCGCAGCGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAACTTTGCCAACTTCACGCACAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGGCAGAAAGTATTCGTGACCGAGGTAATCGTTGAGAATTTTGCTTTGCTTGAGCCACGGCA
AGCGTCTCAGGATGGTCAACAACGATCGGCTAATAACCCAGCGGCCGCAAGCCAAGGCAACAGTTTTGCCAACAATGGTC
AGCCAGTCGATATCAGGGATGATGATCTTCCATTCTAA
ATGCTTAATTCAGTTGCTTTAACAGGCAGATTAACTAAACCGGTTGACCTTCGCTACACACAAAGCGGAACGGCAGTTGG
TTCATTTACGATTGCTGTTGATCGCCAATTTCGCAGCGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGCCATCT
GGCGTAAGTCTGCTGAGAACTTTGCCAACTTCACGCACAAGGGTTCACTTGTTGGCATCGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGGCAGAAAGTATTCGTGACCGAGGTAATCGTTGAGAATTTTGCTTTGCTTGAGCCACGGCA
AGCGTCTCAGGATGGTCAACAACGATCGGCTAATAACCCAGCGGCCGCAAGCCAAGGCAACAGTTTTGCCAACAATGGTC
AGCCAGTCGATATCAGGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.662 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.674 |
100 |
0.566 |
| ssb | Neisseria gonorrhoeae MS11 |
32.37 |
100 |
0.386 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
73.103 |
0.386 |
| ssb | Neisseria meningitidis MC58 |
31.792 |
100 |
0.379 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
37.241 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
30.636 |
100 |
0.366 |