Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IL310_RS13065 Genome accession   NZ_CP117409
Coordinates   2188844..2189440 (-) Length   198 a.a.
NCBI ID   WP_003131648.1    Uniprot ID   Q9CIL6
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2183844..2194440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS13050 (IL310_13055) - 2184459..2186111 (-) 1653 WP_201248515.1 peptide ABC transporter substrate-binding protein -
  IL310_RS13055 (IL310_13060) murF 2186281..2187603 (-) 1323 WP_201248514.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  IL310_RS13060 (IL310_13065) - 2187678..2188727 (-) 1050 WP_058204068.1 D-alanine--D-alanine ligase -
  IL310_RS13065 (IL310_13070) recR 2188844..2189440 (-) 597 WP_003131648.1 recombination mediator RecR Machinery gene
  IL310_RS13070 (IL310_13075) - 2189579..2191744 (-) 2166 WP_201248513.1 penicillin-binding transpeptidase domain-containing protein -
  IL310_RS13075 (IL310_13080) ahpF 2191910..2193439 (-) 1530 WP_201248512.1 alkyl hydroperoxide reductase subunit F -
  IL310_RS13080 (IL310_13085) ahpC 2193506..2194069 (-) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21909.22 Da        Isoelectric Point: 4.8226

>NTDB_id=718063 IL310_RS13065 WP_003131648.1 2188844..2189440(-) (recR) [Lactococcus lactis strain LB7]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCAICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=718063 IL310_RS13065 WP_003131648.1 2188844..2189440(-) (recR) [Lactococcus lactis strain LB7]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTTTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTGTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGTGGGAATTTAACAGAAAGTGATCCTTGCGCCATTTGTACCGACCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATTCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGGATTTCTCCTGATGAAATTAATGTTAAAACGTTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATTATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTGACTCGCTTGGCTCGTGGATTAGCTGTAGGATCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCGGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485