Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   EL277_RS04805 Genome accession   NZ_AP018936
Coordinates   909340..909990 (+) Length   216 a.a.
NCBI ID   WP_000387346.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NU83127     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 904340..914990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL277_RS04770 (SPNU_0905) - 904847..905062 (+) 216 WP_001232082.1 YozE family protein -
  EL277_RS04775 (SPNU_0906) - 905148..906116 (+) 969 WP_000658183.1 PhoH family protein -
  EL277_RS04785 (SPNU_0907) - 906309..906809 (+) 501 WP_000566985.1 GNAT family N-acetyltransferase -
  EL277_RS04790 (SPNU_0908) - 906812..907138 (+) 327 Protein_909 TfoX/Sxy family protein -
  EL277_RS04795 (SPNU_0910) ald 907439..908526 (-) 1088 Protein_910 alanine dehydrogenase -
  EL277_RS04800 (SPNU_0911) - 908703..909272 (+) 570 WP_000443745.1 GNAT family N-acetyltransferase -
  EL277_RS04805 (SPNU_0912) comEA/celA/cilE 909340..909990 (+) 651 WP_000387346.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL277_RS04810 (SPNU_0913) comEC/celB 909974..912214 (+) 2241 WP_000942416.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL277_RS12710 - 912363..912580 (+) 218 Protein_914 hypothetical protein -
  EL277_RS04820 (SPNU_0914) - 912613..913200 (+) 588 WP_000939883.1 ATP-binding cassette domain-containing protein -
  EL277_RS04825 (SPNU_0915) - 913204..914385 (+) 1182 WP_000655941.1 hypothetical protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23109.37 Da        Isoelectric Point: 6.0661

>NTDB_id=71786 EL277_RS04805 WP_000387346.1 909340..909990(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain NU83127]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDSSTGKEVNKEEKEEPLEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSTSKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGAKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=71786 EL277_RS04805 WP_000387346.1 909340..909990(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain NU83127]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAGCCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTTGCAGCTGTTTCCAAGGACT
CATCGACCGGAAAGGAAGTGAACAAGGAAGAGAAGGAAGAACCCCTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGTCAACAGACTGGTTCGGGGACAGCTTCTTCAACAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATTGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGCCAAGACCATAGAAAAACTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(151-214)

(76-126)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

98.611

100

0.986

  comEA/celA/cilE Streptococcus pneumoniae Rx1

96.759

100

0.968

  comEA/celA/cilE Streptococcus pneumoniae D39

96.759

100

0.968

  comEA/celA/cilE Streptococcus pneumoniae R6

96.759

100

0.968

  comEA/celA/cilE Streptococcus mitis NCTC 12261

96.296

100

0.963

  comEA/celA/cilE Streptococcus mitis SK321

92.593

100

0.926

  comEA Lactococcus lactis subsp. cremoris KW2

43.612

100

0.458

  comEA Latilactobacillus sakei subsp. sakei 23K

34.335

100

0.37

  comEA Bacillus subtilis subsp. subtilis str. 168

41.053

87.963

0.361


Multiple sequence alignment