Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | NRZ28_RS04160 | Genome accession | NZ_CP102366 |
| Coordinates | 868161..868481 (-) | Length | 106 a.a. |
| NCBI ID | WP_076362890.1 | Uniprot ID | - |
| Organism | Aeromonas hydrophila strain BC16 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 863161..873481
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NRZ28_RS04140 (NRZ28_04140) | - | 863482..864159 (-) | 678 | WP_268032216.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| NRZ28_RS04145 (NRZ28_04145) | - | 864500..865471 (+) | 972 | WP_268032217.1 | response regulator | - |
| NRZ28_RS04150 (NRZ28_04150) | - | 865544..866941 (-) | 1398 | WP_017783362.1 | peptide MFS transporter | - |
| NRZ28_RS04155 (NRZ28_04155) | galU | 867155..868066 (-) | 912 | WP_029305299.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| NRZ28_RS04160 (NRZ28_04160) | comEA | 868161..868481 (-) | 321 | WP_076362890.1 | ComEA family DNA-binding protein | Machinery gene |
| NRZ28_RS04165 (NRZ28_04165) | cysQ | 868649..869419 (+) | 771 | WP_175610396.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| NRZ28_RS04170 (NRZ28_04170) | - | 869500..869796 (-) | 297 | WP_005309589.1 | YciI family protein | - |
| NRZ28_RS04175 (NRZ28_04175) | - | 869822..870373 (-) | 552 | WP_016351858.1 | septation protein A | - |
| NRZ28_RS04180 (NRZ28_04180) | - | 870478..871983 (-) | 1506 | WP_268032218.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| NRZ28_RS04185 (NRZ28_04185) | trhA | 872208..872843 (+) | 636 | WP_268032219.1 | PAQR family membrane homeostasis protein TrhA | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11217.05 Da Isoelectric Point: 9.5773
>NTDB_id=716499 NRZ28_RS04160 WP_076362890.1 868161..868481(-) (comEA) [Aeromonas hydrophila strain BC16]
MNYKTLTATLLLSCLPLFSQPLLAADKPAAKPATTVTAAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
MNYKTLTATLLLSCLPLFSQPLLAADKPAAKPATTVTAAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=716499 NRZ28_RS04160 WP_076362890.1 868161..868481(-) (comEA) [Aeromonas hydrophila strain BC16]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGTTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTCAACACCGCCAGTATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAGAAGGCACAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGTATCGGACCCGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGTTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTCAACACCGCCAGTATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAGAAGGCACAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGTATCGGACCCGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
52.727 |
100 |
0.547 |
| comEA | Vibrio cholerae strain A1552 |
52.727 |
100 |
0.547 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
43.243 |
100 |
0.453 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.535 |
95.283 |
0.443 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
47.959 |
92.453 |
0.443 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
51.316 |
71.698 |
0.368 |
| comEA | Legionella pneumophila str. Paris |
38.235 |
96.226 |
0.368 |
| comEA | Legionella pneumophila strain ERS1305867 |
38.235 |
96.226 |
0.368 |