Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   PO908_RS05025 Genome accession   NZ_CP117042
Coordinates   945536..946240 (+) Length   234 a.a.
NCBI ID   WP_003024731.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 940536..951240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS05000 (PO908_04980) rpmG 940633..940782 (+) 150 WP_003024746.1 50S ribosomal protein L33 -
  PO908_RS05005 (PO908_04985) secG 940822..941055 (+) 234 WP_003024744.1 preprotein translocase subunit SecG -
  PO908_RS05010 (PO908_04990) rnr 941148..943481 (+) 2334 WP_021001630.1 ribonuclease R -
  PO908_RS05015 (PO908_04995) smpB 943444..943911 (+) 468 WP_003024738.1 SsrA-binding protein SmpB -
  PO908_RS05025 (PO908_05005) comEA/celA/cilE 945536..946240 (+) 705 WP_003024731.1 helix-hairpin-helix domain-containing protein Machinery gene
  PO908_RS05030 (PO908_05010) comEC/celB 946224..948452 (+) 2229 WP_037613581.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PO908_RS05035 (PO908_05015) - 948534..949100 (+) 567 WP_021001633.1 DUF805 domain-containing protein -
  PO908_RS05040 (PO908_05020) - 949731..950717 (+) 987 WP_003024723.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 24996.90 Da        Isoelectric Point: 4.6812

>NTDB_id=716426 PO908_RS05025 WP_003024731.1 945536..946240(+) (comEA/celA/cilE) [Streptococcus anginosus strain CGMH_KH1]
MLETIIEKMKEYKILIGLSLIGLIIAGFFMINGQSSRQSNVAELAQETVTSSEAESEEISTGTKKNSQKEKAEPQTSSSE
ESEFLTVDVKGAVKNPGIYQLKKTSRINDAIQKAGGLTTDADSKSINLAQKLTDEAVVYVATMGENAASVSSNTGQSSTS
GTSEVASQKGNKVNLNTADLSELQTISGIGQKRAQDILDYREANGKFNSVDDLKNVSGVGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=716426 PO908_RS05025 WP_003024731.1 945536..946240(+) (comEA/celA/cilE) [Streptococcus anginosus strain CGMH_KH1]
ATGTTAGAGACAATCATTGAAAAGATGAAAGAGTATAAAATTTTGATTGGTTTAAGTTTGATTGGTTTGATAATAGCAGG
ATTTTTTATGATAAATGGTCAATCTAGTAGACAATCAAATGTAGCAGAGCTCGCACAGGAAACAGTTACGAGTTCGGAGG
CAGAATCAGAAGAAATTTCAACTGGAACGAAGAAAAACTCACAGAAAGAAAAAGCAGAGCCTCAAACGAGTTCCAGTGAA
GAATCAGAATTTTTAACCGTAGATGTCAAGGGTGCAGTCAAAAATCCAGGTATTTATCAACTGAAAAAGACTAGCCGTAT
CAATGATGCGATTCAAAAAGCAGGTGGTTTAACGACAGACGCTGACAGCAAGTCTATCAATTTGGCGCAGAAACTAACGG
ATGAAGCTGTTGTTTATGTGGCAACTATGGGTGAGAATGCGGCGAGTGTTTCAAGCAATACAGGACAATCTTCAACATCA
GGAACTAGTGAAGTCGCATCGCAAAAAGGGAATAAGGTCAATCTAAATACAGCTGATTTATCTGAGTTGCAGACCATTTC
TGGTATTGGTCAAAAACGCGCGCAAGATATTTTAGATTATCGGGAGGCAAACGGGAAATTTAATTCCGTTGATGACCTGA
AAAATGTATCAGGAGTAGGTGCTAAAACACTAGAGAAATTGAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(87-140)

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae R6

53.219

99.573

0.53
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

53.219

99.573

0.53
  comEA/celA/cilE Streptococcus pneumoniae Rx1

53.219

99.573

0.53
  comEA/celA/cilE Streptococcus pneumoniae D39

53.219

99.573

0.53
  comEA/celA/cilE Streptococcus mitis SK321

52.361

99.573

0.521
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.502

99.573

0.513
  comEA Streptococcus thermophilus LMD-9

44.255

100

0.444
  comEA Lactococcus lactis subsp. cremoris KW2

42.06

99.573

0.419