Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | NRK99_RS17835 | Genome accession | NZ_CP102326 |
| Coordinates | 3943709..3944029 (+) | Length | 106 a.a. |
| NCBI ID | WP_017780975.1 | Uniprot ID | - |
| Organism | Aeromonas dhakensis strain BC04 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3938709..3949029
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NRK99_RS17810 (NRK99_17810) | trhA | 3939346..3939981 (-) | 636 | WP_010636289.1 | PAQR family membrane homeostasis protein TrhA | - |
| NRK99_RS17815 (NRK99_17815) | - | 3940199..3941704 (+) | 1506 | WP_126882540.1 | pyridoxal-dependent decarboxylase | - |
| NRK99_RS17820 (NRK99_17820) | - | 3941809..3942372 (+) | 564 | WP_126882541.1 | septation protein A | - |
| NRK99_RS17825 (NRK99_17825) | - | 3942397..3942693 (+) | 297 | WP_126882542.1 | YciI family protein | - |
| NRK99_RS17830 (NRK99_17830) | cysQ | 3942772..3943542 (-) | 771 | WP_267999904.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| NRK99_RS17835 (NRK99_17835) | comEA | 3943709..3944029 (+) | 321 | WP_017780975.1 | ComEA family DNA-binding protein | Machinery gene |
| NRK99_RS17840 (NRK99_17840) | galU | 3944124..3945035 (+) | 912 | WP_005309577.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| NRK99_RS17845 (NRK99_17845) | - | 3945249..3946646 (+) | 1398 | WP_011707249.1 | peptide MFS transporter | - |
| NRK99_RS17850 (NRK99_17850) | - | 3946719..3947690 (-) | 972 | WP_005309570.1 | response regulator | - |
| NRK99_RS17855 (NRK99_17855) | - | 3948046..3948723 (+) | 678 | WP_258120230.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11155.96 Da Isoelectric Point: 8.9714
>NTDB_id=716141 NRK99_RS17835 WP_017780975.1 3943709..3944029(+) (comEA) [Aeromonas dhakensis strain BC04]
MNYKTLTATLLLSCLPLLSQPLLAADKPAATPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
MNYKTLTATLLLSCLPLLSQPLLAADKPAATPATTVATAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=716141 NRK99_RS17835 WP_017780975.1 3943709..3944029(+) (comEA) [Aeromonas dhakensis strain BC04]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCACACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACCGCGCTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCGCTGCTCAGCCAGCCCCTGCTGGCCGCCGACAA
GCCCGCCGCCACACCGGCCACCACGGTTGCCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACCGCCAGTATCAACG
AGTTGACCGCGCTCAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGATTATCGCGAGAAACAGGGCAAGTTCACC
ACTGTTGACCAGCTTGCCGATGTCAGCGGTATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATCATCGTCAAGTA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
53.636 |
100 |
0.557 |
| comEA | Vibrio cholerae strain A1552 |
53.636 |
100 |
0.557 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
44.144 |
100 |
0.462 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
46.392 |
91.509 |
0.425 |
| comEA | Legionella pneumophila strain ERS1305867 |
42.857 |
92.453 |
0.396 |
| comEA | Legionella pneumophila str. Paris |
42.857 |
92.453 |
0.396 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
52.632 |
71.698 |
0.377 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
63.492 |
59.434 |
0.377 |