Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DLM_RS21625 Genome accession   NZ_AP018823
Coordinates   4607097..4608179 (-) Length   360 a.a.
NCBI ID   WP_089082845.1    Uniprot ID   A0A3G9GJ17
Organism   Aquitalea magnusonii strain H3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4602097..4613179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM_RS21600 (DLM_4303) - 4602113..4602862 (-) 750 WP_089082850.1 hypothetical protein -
  DLM_RS21605 (DLM_4304) - 4602988..4603365 (+) 378 WP_089082849.1 DUF1622 domain-containing protein -
  DLM_RS21610 (DLM_4305) - 4603441..4603836 (-) 396 WP_089082848.1 hypothetical protein -
  DLM_RS21615 (DLM_4306) topA 4604130..4606427 (-) 2298 WP_089082847.1 type I DNA topoisomerase -
  DLM_RS21620 (DLM_4307) - 4606597..4607055 (-) 459 WP_089082846.1 DUF494 family protein -
  DLM_RS21625 (DLM_4308) dprA 4607097..4608179 (-) 1083 WP_089082845.1 DNA-processing protein DprA Machinery gene
  DLM_RS21630 (DLM_4309) - 4608176..4609213 (-) 1038 WP_089082844.1 LysM peptidoglycan-binding domain-containing protein -
  DLM_RS21635 (DLM_4310) def 4609341..4609844 (+) 504 WP_089082843.1 peptide deformylase -
  DLM_RS21640 (DLM_4311) fmt 4609928..4610845 (+) 918 WP_089082842.1 methionyl-tRNA formyltransferase -
  DLM_RS21645 (DLM_4312) htpX 4610892..4611734 (+) 843 WP_089082841.1 zinc metalloprotease HtpX -
  DLM_RS21650 (DLM_4314) rsmB 4611847..4613100 (+) 1254 WP_089082840.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 37565.92 Da        Isoelectric Point: 6.0913

>NTDB_id=71549 DLM_RS21625 WP_089082845.1 4607097..4608179(-) (dprA) [Aquitalea magnusonii strain H3]
MSQSTADWLLLALTPGIGPAGFLKLIARFGSASHAVAASTAQTTPIIGQEAALALREQLAGPAVEAALTWASQPDCTLLS
LQDDDYPQALAETASPPPLLFARGQRALLQRPMLAMVGSRSATPPGKQIAEEFSRRLSAVGYTIVSGLASGIDAASHRGA
LQEAGSTIAVIGTGIDRVYPASNRELAHHIGSAGLILSEFPLGAGPLASHFPRRNRIIAGLSRGCLVVEANINSGSLITA
RLSGEYGREVMAVPGSIHNPQARGCHRLLKEGARLIETVDDVLEEIGRPAVTTPPAPRNTADEQAAEHPVLSQMGFDPVS
SETLALQLGLTQGELYAMLLELELAGKLASLPGGQVQRLV

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=71549 DLM_RS21625 WP_089082845.1 4607097..4608179(-) (dprA) [Aquitalea magnusonii strain H3]
ATGAGCCAGTCCACGGCAGACTGGCTGCTGCTGGCACTGACCCCTGGCATCGGTCCGGCCGGTTTTCTCAAACTGATTGC
CCGCTTCGGATCAGCCAGCCACGCCGTTGCCGCCAGCACTGCCCAGACCACCCCCATCATTGGCCAGGAGGCGGCGCTTG
CCCTGCGTGAGCAACTGGCTGGCCCGGCGGTGGAAGCGGCGCTGACCTGGGCAAGCCAGCCTGACTGCACCCTGCTTAGC
CTGCAGGACGACGACTATCCGCAAGCACTGGCCGAAACCGCCTCGCCGCCCCCGCTGTTGTTTGCCCGTGGCCAGCGCGC
ACTGCTGCAACGCCCCATGCTGGCCATGGTGGGCAGCCGCAGTGCCACGCCACCGGGCAAGCAGATTGCCGAGGAGTTTT
CCCGTCGCCTATCCGCCGTGGGCTACACCATTGTCAGCGGCCTGGCCAGCGGCATCGACGCCGCTTCCCATCGCGGTGCC
TTGCAGGAAGCCGGCTCCACCATTGCCGTTATCGGCACCGGCATCGACCGCGTCTACCCGGCCAGCAACCGTGAACTGGC
CCATCACATCGGCAGTGCCGGCCTGATCCTGTCTGAATTCCCGCTGGGAGCAGGACCGCTGGCCAGCCACTTTCCACGCC
GCAACCGCATCATTGCCGGCTTGTCGCGCGGCTGCCTGGTGGTGGAGGCCAATATCAATTCCGGCTCGCTGATTACCGCC
AGGCTCTCCGGTGAATATGGCCGCGAAGTGATGGCCGTTCCCGGCTCCATCCATAATCCGCAGGCGCGGGGCTGCCATCG
GCTGCTGAAGGAAGGTGCCCGGCTGATCGAAACGGTGGACGATGTGCTGGAAGAGATTGGCCGCCCGGCAGTGACCACCC
CGCCAGCACCACGCAACACAGCAGATGAGCAGGCGGCGGAGCACCCGGTTTTGTCGCAGATGGGCTTTGATCCGGTGAGC
AGCGAGACGCTTGCATTGCAACTCGGGTTGACGCAGGGGGAGCTTTACGCGATGCTGCTCGAGCTGGAGCTTGCCGGCAA
GCTCGCCAGCTTGCCCGGTGGGCAGGTCCAGCGGCTGGTCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-277)

DprA winged helix domain (DprA_WH)

(294-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G9GJ17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

48.831

100

0.522
  dprA Neisseria gonorrhoeae MS11

48.571

100

0.519
  dprA Neisseria meningitidis MC58

48.062

100

0.517
  dprA Neisseria meningitidis strain C311

48.062

100

0.517
  dprA Vibrio campbellii strain DS40M4

40.331

100

0.406
  dprA Vibrio cholerae strain A1552

37.435

100

0.397
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.056

100

0.381
  dprA Legionella pneumophila strain ERS1305867

44.781

82.5

0.369
  dprA Acinetobacter baylyi ADP1

37.644

96.667

0.364

Multiple sequence alignment