Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NQ200_RS02695 Genome accession   NZ_CP102172
Coordinates   569437..569757 (-) Length   106 a.a.
NCBI ID   WP_099994235.1    Uniprot ID   -
Organism   Aeromonas salmonicida subsp. masoucida strain wx3-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 564437..574757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ200_RS02675 - 564718..565416 (-) 699 WP_058395949.1 DnaT-like ssDNA-binding domain-containing protein -
  NQ200_RS02680 - 565772..566743 (+) 972 WP_113721852.1 response regulator -
  NQ200_RS02685 - 566819..568216 (-) 1398 WP_017412884.1 peptide MFS transporter -
  NQ200_RS02690 galU 568430..569341 (-) 912 WP_113721918.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NQ200_RS02695 comEA 569437..569757 (-) 321 WP_099994235.1 ComEA family DNA-binding protein Machinery gene
  NQ200_RS02700 cysQ 569924..570694 (+) 771 WP_309266187.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NQ200_RS02705 - 570776..571072 (-) 297 WP_005318066.1 YciI family protein -
  NQ200_RS02710 - 571099..571650 (-) 552 WP_113721921.1 septation protein A -
  NQ200_RS02715 - 571736..573271 (-) 1536 WP_309266188.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  NQ200_RS02720 - 573496..574131 (+) 636 WP_212540967.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11201.04 Da        Isoelectric Point: 9.6863

>NTDB_id=715139 NQ200_RS02695 WP_099994235.1 569437..569757(-) (comEA) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
MNYKTLTATLLLSCLPLLSQPLLAADKSAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFREKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=715139 NQ200_RS02695 WP_099994235.1 569437..569757(-) (comEA) [Aeromonas salmonicida subsp. masoucida strain wx3-1]
ATGAACTACAAGACCCTGACTGCCACCCTGCTGCTGAGCTGCCTGCCCCTGTTGAGCCAGCCTTTGCTTGCCGCCGACAA
GTCGGCAGCCAAGCCAGCGACCACGGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTGAGAAGCAGGGCAAGTTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCAACTCTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

51.818

100

0.538
  comEA Vibrio cholerae C6706

51.818

100

0.538
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

46.392

91.509

0.425
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377
  comEA Legionella pneumophila str. Paris

40.816

92.453

0.377
  comEA Legionella pneumophila strain ERS1305867

40.816

92.453

0.377
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.316

71.698

0.368