Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NQZ98_RS05395 Genome accession   NZ_CP102135
Coordinates   1057821..1058663 (-) Length   280 a.a.
NCBI ID   WP_024400617.1    Uniprot ID   A0A9Q5G966
Organism   Streptococcus suis strain M106471_S40     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1052821..1063663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS05370 (NQZ98_05370) - 1052889..1053713 (-) 825 WP_024400615.1 replication initiator protein A -
  NQZ98_RS05375 (NQZ98_05375) - 1053710..1053883 (-) 174 WP_006738653.1 hypothetical protein -
  NQZ98_RS05380 (NQZ98_05380) rplL 1054143..1054508 (-) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  NQZ98_RS05385 (NQZ98_05385) rplJ 1054574..1055068 (-) 495 WP_002936486.1 50S ribosomal protein L10 -
  NQZ98_RS05390 (NQZ98_05390) topA 1055635..1057728 (-) 2094 WP_024400616.1 type I DNA topoisomerase -
  NQZ98_RS05395 (NQZ98_05395) dprA 1057821..1058663 (-) 843 WP_024400617.1 DNA-processing protein DprA Machinery gene
  NQZ98_RS05400 (NQZ98_05400) - 1058722..1059279 (-) 558 WP_044677281.1 sugar O-acetyltransferase -
  NQZ98_RS05405 (NQZ98_05405) - 1059474..1060022 (-) 549 WP_074485103.1 DUF6036 family nucleotidyltransferase -
  NQZ98_RS05410 (NQZ98_05410) - 1060015..1060302 (-) 288 WP_099833264.1 hypothetical protein -
  NQZ98_RS05415 (NQZ98_05415) - 1060302..1060760 (-) 459 WP_099833265.1 hypothetical protein -
  NQZ98_RS05420 (NQZ98_05420) - 1060750..1061667 (-) 918 WP_074485110.1 IS1595 family transposase -
  NQZ98_RS05425 (NQZ98_05425) - 1061713..1062096 (+) 384 WP_257116701.1 hypothetical protein -
  NQZ98_RS05430 (NQZ98_05430) - 1062188..1063171 (+) 984 WP_061852952.1 adenine-specific methyltransferase EcoRI family protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31339.23 Da        Isoelectric Point: 8.4493

>NTDB_id=714580 NQZ98_RS05395 WP_024400617.1 1057821..1058663(-) (dprA) [Streptococcus suis strain M106471_S40]
MNNFELFKWKKAGLTNLNINKVLTYQERFGKKLSLRNIAVVSECKNPLLFMENYKNLDVKACREEFNRFPSFSILDDVYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=714580 NQZ98_RS05395 WP_024400617.1 1057821..1058663(-) (dprA) [Streptococcus suis strain M106471_S40]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTCTGACCAATCTCAACATCAATAAGGTATTGACTTATCAAGA
AAGATTTGGCAAAAAGCTATCCTTGCGCAATATCGCTGTCGTTTCTGAATGTAAAAATCCATTGTTATTCATGGAAAACT
ATAAGAATTTAGATGTCAAAGCCTGTCGGGAAGAATTTAACAGGTTTCCTTCTTTTTCGATTTTGGATGACGTCTATCCA
CTAGCATTGAAGCAAATTTACAATCCACCTGTACTTTTATTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
TGCAGTCGTTGGTACACGAAATGCCAGCAAAAATGGTATTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGCT
TTGTCATTGTCAGTGGTTTGGCAAGAGGAATTGATACAGCTGCTCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCTGTAATCGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAGGATTTGCAGACCTATATTGGAAAACACCATTT
GGTGCTGACAGAGTATGAAGCTGGTGCTCAGCCACTCAAATACCATTTTCCAGAACGCAATCGCATTATAGCTGGTTTGG
TGGAAGGATTGGTAGTCTGTGAAGCTAAGATGCGGTCTGGTAGCCTCATTACCTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

71.786

100

0.718
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

64.286

100

0.643
  dprA/cilB/dalA Streptococcus pneumoniae D39

64.286

100

0.643
  dprA/cilB/dalA Streptococcus pneumoniae R6

64.286

100

0.643
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

64.286

100

0.643
  dprA/cilB/dalA Streptococcus mitis SK321

63.929

100

0.639
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60.357

100

0.604
  dprA Legionella pneumophila strain ERS1305867

40.299

95.714

0.386
  dprA Bacillus subtilis subsp. subtilis str. 168

49.091

78.571

0.386
  dprA Vibrio campbellii strain DS40M4

36.519

100

0.382
  dprA Latilactobacillus sakei subsp. sakei 23K

41.365

88.929

0.368