NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	NQZ84_RS07040	Genome accession	NZ_CP102094
Coordinates	1434513..1435103 (-)	Length	196 a.a.
NCBI ID	WP_044670474.1	Uniprot ID	-
Organism	Streptococcus suis strain 12RC1
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1429513..1440103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ84_RS07015 (NQZ84_07015)	-	1430010..1430774 (-)	765	WP_002937291.1	ABC transporter ATP-binding protein	-
NQZ84_RS07020 (NQZ84_07020)	-	1430774..1431721 (-)	948	WP_257048420.1	branched-chain amino acid ABC transporter permease	-
NQZ84_RS07025 (NQZ84_07025)	-	1431724..1432611 (-)	888	WP_044678641.1	branched-chain amino acid ABC transporter permease	-
NQZ84_RS07030 (NQZ84_07030)	-	1432813..1433982 (-)	1170	WP_044678640.1	ABC transporter substrate-binding protein	-
NQZ84_RS07035 (NQZ84_07035)	-	1434114..1434386 (-)	273	WP_024408691.1	YlbG family protein	-
NQZ84_RS07040 (NQZ84_07040)	clpP	1434513..1435103 (-)	591	WP_044670474.1	ATP-dependent Clp protease proteolytic subunit	Regulator
NQZ84_RS07045 (NQZ84_07045)	upp	1435220..1435849 (-)	630	WP_012027487.1	uracil phosphoribosyltransferase	-
NQZ84_RS07050 (NQZ84_07050)	-	1435929..1437545 (-)	1617	WP_257048428.1	glycoside hydrolase family 13 protein	-
NQZ84_RS07055 (NQZ84_07055)	gtfA	1437617..1439065 (-)	1449	WP_257048430.1	sucrose phosphorylase	-
NQZ84_RS07060 (NQZ84_07060)	-	1439136..1439966 (-)	831	WP_002937312.1	carbohydrate ABC transporter permease	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21506.79 Da Isoelectric Point: 5.7110

                                >NTDB_id=714304 NQZ84_RS07040 WP_044670474.1 1434513..1435103(-) (clpP) [Streptococcus suis strain 12RC1]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK

TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNIKVK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=714304 NQZ84_RS07040 WP_044670474.1 1434513..1435103(-) (clpP) [Streptococcus suis strain 12RC1]

ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTCACGCCTTTTGAAAGACCGTAT

TATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCACAATTGCTTTTCCTTGATGCCCAAGACC

CTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTTGCTATTGTAGACACGATGAAT

TTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCATCATTGCATCAAGCGGTGCCAA

GGGCAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAGCCAATGGGCGGAACAGGTGGTGGCACTCAGCAAA

CAGATATGGCTATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATCTTGGCAGACAACTCAGGTAAG

ACAGTCAAGCAAATCCATAAGGATGCGGAACGCGATTACTGGATGTCAGCTGAAGAAACCTTGGCTTACGGATTTATTGA

CCAGATTATGGACAATATAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	92.347	100	0.923
clpP	Streptococcus pyogenes MGAS315	92.347	100	0.923
clpP	Streptococcus mutans UA159	90.306	100	0.903
clpP	Streptococcus thermophilus LMD-9	88.776	100	0.888
clpP	Streptococcus thermophilus LMG 18311	88.776	100	0.888
clpP	Streptococcus pneumoniae R6	90.625	97.959	0.888
clpP	Streptococcus pneumoniae Rx1	90.625	97.959	0.888
clpP	Streptococcus pneumoniae D39	90.625	97.959	0.888
clpP	Streptococcus pneumoniae TIGR4	90.625	97.959	0.888
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	84.184	100	0.842
clpP	Lactococcus lactis subsp. cremoris KW2	83.673	100	0.837
clpP	Bacillus subtilis subsp. subtilis str. 168	57.653	100	0.577
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.854	97.959	0.577

Detailed information NTG0714304