NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	PPM30_RS12580	Genome accession	NZ_CP116868
Coordinates	2385259..2385864 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis subsp. subtilis strain MGP003
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2380259..2390864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPM30_RS12550	-	2381072..2381461 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
PPM30_RS12555	yajC	2381518..2381784 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
PPM30_RS12560	tgt	2381821..2382966 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
PPM30_RS12565	queA	2382993..2384021 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
PPM30_RS12570	yrzS	2384051..2384251 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
PPM30_RS12575	ruvB	2384244..2385248 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
PPM30_RS12580	ruvA	2385259..2385864 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
PPM30_RS12585	bofC	2386003..2386515 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
PPM30_RS12590	csbX	2386563..2387870 (-)	1308	WP_003246197.1	MFS transporter	-
PPM30_RS12595	iolG	2387941..2388966 (-)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
PPM30_RS12600	yrzF	2389204..2389851 (+)	648	WP_003246159.1	phosphotransferase	-
PPM30_RS12605	-	2389897..2390019 (-)	123	WP_003229707.1	hypothetical protein	-
PPM30_RS12610	yrzH	2390104..2390394 (+)	291	WP_003246047.1	DUF5412 family protein	-
PPM30_RS12615	-	2390401..2390541 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=713575 PPM30_RS12580 WP_003229717.1 2385259..2385864(-) (ruvA) [Bacillus subtilis subsp. subtilis strain MGP003]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=713575 PPM30_RS12580 WP_003229717.1 2385259..2385864(-) (ruvA) [Bacillus subtilis subsp. subtilis strain MGP003]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0713575