Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NM897_RS06085 Genome accession   NZ_CP101819
Coordinates   1254875..1255369 (-) Length   164 a.a.
NCBI ID   WP_341962916.1    Uniprot ID   -
Organism   Planococcus maritimus strain KRIBB-KS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1249875..1260369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM897_RS06070 (NM897_06075) - 1250320..1252296 (-) 1977 WP_068487809.1 DHH family phosphoesterase -
  NM897_RS06075 (NM897_06080) - 1252311..1253264 (-) 954 WP_341962914.1 DUF2232 domain-containing protein -
  NM897_RS06080 (NM897_06085) rpsR 1254586..1254822 (-) 237 WP_058382282.1 30S ribosomal protein S18 -
  NM897_RS06085 (NM897_06090) ssbA 1254875..1255369 (-) 495 WP_341962916.1 single-stranded DNA-binding protein Machinery gene
  NM897_RS06090 (NM897_06095) rpsF 1255423..1255710 (-) 288 WP_068459466.1 30S ribosomal protein S6 -
  NM897_RS06095 (NM897_06100) - 1255876..1256427 (+) 552 WP_069577004.1 DUF3267 domain-containing protein -
  NM897_RS06100 (NM897_06105) - 1256496..1256879 (-) 384 WP_341962919.1 gamma-glutamylcyclotransferase -
  NM897_RS06105 (NM897_06110) ychF 1257006..1258106 (-) 1101 WP_068465491.1 redox-regulated ATPase YchF -
  NM897_RS06110 (NM897_06115) - 1258187..1258387 (-) 201 WP_058382277.1 DUF951 domain-containing protein -
  NM897_RS06115 (NM897_06120) - 1258403..1259305 (-) 903 WP_341962922.1 mechanosensitive ion channel family protein -
  NM897_RS06120 (NM897_06125) - 1259328..1260041 (-) 714 WP_069577006.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17903.50 Da        Isoelectric Point: 4.9719

>NTDB_id=712130 NM897_RS06085 WP_341962916.1 1254875..1255369(-) (ssbA) [Planococcus maritimus strain KRIBB-KS-1]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEREADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKGANSGSGDRSSDRSYGQQPSYQQNQPSSPSQQNNTRVDDDPFSSGSGKIEVSDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=712130 NM897_RS06085 WP_341962916.1 1254875..1255369(-) (ssbA) [Planococcus maritimus strain KRIBB-KS-1]
ATGATCAACCGGGTTGTATTGGTCGGAAGACTGACAAAAGATCCCGATCTTCGTTACACACCAAGCGGCGCGGCGGTGGC
TCGTTTTACACTGGCTGTAAACCGGACATTCTCCAATGCGCAAGGTGAACGCGAAGCGGATTTTATCAATTGTACCGTTT
GGCGCAAGCAGGCTGAAAACACAGCGAATTTCCTTAAAAAAGGAAGTCTTGCCGGTGTCGAAGGCCGCATTCAAACTGGC
AGCTACGAGGGTCAAGATGGCAAGCGCGTTTATACGACGGAAGTGGTGGCAGATAGCGTTCAATTCCTTGAACCAAAAGG
CGCCAACTCCGGATCTGGGGATCGTTCAAGCGATCGCTCGTATGGGCAGCAGCCGTCTTATCAACAGAACCAACCGTCTA
GTCCAAGTCAGCAAAACAACACTCGTGTAGATGACGATCCGTTTTCAAGCGGAAGCGGGAAGATCGAAGTTTCAGACGAC
GATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

56.395

100

0.591
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.868

64.634

0.445
  ssb Neisseria gonorrhoeae MS11

35.754

100

0.39
  ssb Vibrio cholerae strain A1552

33.702

100

0.372
  ssb Neisseria meningitidis MC58

35.057

100

0.372
  ssb Glaesserella parasuis strain SC1401

32.609

100

0.366