Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NOX82_RS29260 Genome accession   NZ_CP101752
Coordinates   6675787..6677880 (-) Length   697 a.a.
NCBI ID   WP_256513230.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain C12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6670787..6682880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOX82_RS29245 (NOX82_29245) - 6672434..6674095 (-) 1662 WP_256513225.1 AAA family ATPase -
  NOX82_RS29250 (NOX82_29250) aroB 6674102..6675208 (-) 1107 WP_256513227.1 3-dehydroquinate synthase -
  NOX82_RS29255 (NOX82_29255) aroK 6675260..6675751 (-) 492 WP_370311007.1 shikimate kinase AroK -
  NOX82_RS29260 (NOX82_29260) pilQ 6675787..6677880 (-) 2094 WP_256513230.1 type IV pilus secretin PilQ Machinery gene
  NOX82_RS29265 (NOX82_29265) pilP 6677937..6678461 (-) 525 WP_074985598.1 type 4a pilus biogenesis lipoprotein PilP -
  NOX82_RS29270 (NOX82_29270) pilO 6678458..6679114 (-) 657 WP_009613645.1 type 4a pilus biogenesis protein PilO -
  NOX82_RS29275 (NOX82_29275) pilN 6679111..6679710 (-) 600 WP_009613648.1 type 4a pilus biogenesis protein PilN -
  NOX82_RS29280 (NOX82_29280) pilM 6679710..6680774 (-) 1065 WP_009613650.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 697 a.a.        Molecular weight: 74986.12 Da        Isoelectric Point: 5.3988

>NTDB_id=711984 NOX82_RS29260 WP_256513230.1 6675787..6677880(-) (pilQ) [Pseudomonas citronellolis strain C12]
MNRTMTRLGFALLAGLFAPSLLAANLQRVDVASLPGDRVELKLGFDEPVAAPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIINLTSLVPYSTRTQGNNLIILVGQGSGAPAATTSSAPAAAPAYAAAPRPAQPKPYVPVG
KAIRNIDFQRGEQGEGNVVIDLSDPSVSPDIQEQGGKIRLDFPRTQLPDSLRVRLDVKDFATPVQFVNASAAGDKASIVI
EPSGLYDYLVFQTDNRMTVSIKPMTANEAEKRKKDSFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITL
RLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKASDIAKLFQSVT
GTSSGPGAQPAAGTDNRGSITVDDRTNAIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEASVDYTKELGVQWGGSL
SNRGNFNITGGTGGTSSANTFVDLGVSTASPTSGIGIGFVTDNTTLDLQLNAMEKTGNGEVVSQPKVVTSDKETAKILKG
SEIPYQEASSSGATSVSFKEAALSLEVTPQITPDNRIIMQVKVNKDEPDYQNALLGVPPIKKNEVNAKVLVNDGETIVIG
GVFSNTQTKTTSKVPFLGDVPVVGRLFKNDYVTDTKNELLVFLTPRIMNNQAIAIDR

Nucleotide


Download         Length: 2094 bp        

>NTDB_id=711984 NOX82_RS29260 WP_256513230.1 6675787..6677880(-) (pilQ) [Pseudomonas citronellolis strain C12]
ATGAACAGAACTATGACCCGCCTGGGCTTTGCCCTGTTGGCCGGCCTTTTCGCGCCGAGCCTGCTCGCCGCCAACCTGCA
GCGCGTCGATGTGGCCTCGCTGCCGGGGGATCGCGTGGAGCTCAAGCTGGGCTTCGACGAGCCGGTGGCCGCGCCGCGTG
GCTACACCATCGAGCAGCCGGCGCGCATCGCCCTGGACCTGCCGGGCGTGCAGAACAAACTGGGCAGCAAGAACCGCGAG
CTGGGCGTGGGCAACGCGCGCAGCCTGACCGTGGTCGAGGCCAAGGACCGCACCCGCCTGATCATCAACCTGACTAGCCT
GGTGCCGTACTCCACCCGTACCCAGGGCAACAACCTGATCATCCTGGTCGGCCAGGGCAGTGGCGCGCCAGCCGCGACGA
CCAGCTCCGCGCCGGCCGCCGCCCCGGCCTATGCCGCGGCGCCCCGCCCGGCGCAGCCCAAGCCCTACGTGCCGGTGGGC
AAGGCGATCCGCAACATCGACTTCCAGCGCGGCGAGCAGGGCGAGGGCAACGTGGTCATCGACCTGTCCGACCCCAGCGT
CAGCCCGGACATCCAGGAGCAGGGCGGCAAGATCCGCCTGGACTTCCCGCGCACCCAGCTGCCCGACAGCCTGCGCGTGC
GCCTGGACGTGAAGGACTTCGCCACCCCGGTGCAGTTCGTCAATGCCTCGGCGGCCGGCGACAAGGCCAGCATCGTCATC
GAGCCCAGCGGCCTGTACGACTACCTGGTGTTCCAGACCGACAACCGCATGACCGTCAGCATCAAGCCGATGACCGCCAA
CGAGGCGGAGAAGCGCAAGAAAGACAGCTTCGCCTACACCGGCGAGAAACTGTCGCTGAACTTCCAGGACATCGACGTGC
GCTCGGTGCTGCAGCTGATCGCCGACTTCACCGACCTCAACCTGGTGGCCTCGGACACCGTGCAGGGCAACATCACCCTG
CGCCTGCAGAACGTGCCCTGGGACCAGGCGCTGGACCTGGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGTCGGCAA
CGTCCTGCTGGTGGCGCCGGCCGACGAGATCGCCGCGCGCGAGCGCCAGGAGCTGGAAGCGCAGAAGCAGATCGCCGAAC
TGGCGCCGCTGCGTCGCGAGCTGATCCAGGTGAACTACGCCAAGGCCTCCGACATCGCCAAGCTGTTCCAGTCCGTGACC
GGCACCAGTTCCGGCCCGGGCGCCCAGCCTGCCGCCGGGACCGACAACCGTGGCTCCATCACCGTCGATGACCGCACCAA
CGCCATCATCGCCTACCAGACCCAGGACCGCCTGGACGAGCTGCGCCGCATCGTCTCGCAACTGGACATCCCGGTACGCC
AGGTGATGATCGAGGCACGCATCGTCGAGGCCAGCGTCGACTACACCAAGGAGCTGGGGGTGCAATGGGGTGGTTCGCTG
AGCAACCGTGGCAACTTCAATATCACCGGTGGTACTGGTGGTACCAGCAGTGCGAATACCTTCGTCGATCTGGGCGTCAG
CACCGCGTCCCCGACCTCCGGCATCGGCATCGGCTTCGTCACCGACAACACCACCCTGGACCTGCAGCTCAACGCCATGG
AGAAGACCGGTAACGGCGAGGTGGTGTCGCAGCCGAAGGTGGTCACCTCGGACAAGGAAACCGCGAAGATCCTCAAGGGC
TCGGAGATTCCCTACCAGGAAGCCAGCTCCAGCGGCGCCACCTCGGTGTCCTTCAAGGAGGCTGCGCTGTCCCTGGAGGT
CACTCCGCAGATCACCCCGGACAACCGCATCATCATGCAGGTCAAGGTGAACAAGGACGAGCCCGACTACCAGAACGCGC
TGCTCGGCGTGCCGCCGATCAAGAAGAACGAGGTCAACGCCAAGGTGCTGGTCAACGACGGTGAAACCATCGTCATCGGC
GGGGTGTTCTCCAACACCCAGACCAAGACCACCTCCAAGGTCCCGTTCCTCGGCGACGTACCGGTCGTCGGCCGCCTGTT
CAAGAACGACTATGTGACGGACACCAAGAACGAGCTTCTGGTTTTCCTCACTCCCCGGATCATGAATAATCAGGCCATTG
CCATCGATCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(532-688)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-454)

AMIN domain (AMIN)

(40-121)

Secretin and TonB N terminus short domain (STN)

(307-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

77.178

100

0.801
  comQ Acinetobacter baylyi ADP1

41.774

100

0.419
  pilQ Acinetobacter baumannii D1279779

40.813

100

0.417
  pilQ Acinetobacter baumannii strain A118

40.813

100

0.417
  pilQ Legionella pneumophila strain Lp02

39.678

97.991

0.389
  pilQ Legionella pneumophila strain ERS1305867

39.678

97.991

0.389