Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NN994_RS01490 Genome accession   NZ_CP101646
Coordinates   266781..267071 (+) Length   96 a.a.
NCBI ID   WP_194238295.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain UCCSt95     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 261781..272071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN994_RS01465 (NN994_01465) - 262852..263361 (+) 510 WP_064355639.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  NN994_RS01470 (NN994_01470) - 263673..264230 (+) 558 WP_002949523.1 ECF transporter S component -
  NN994_RS01475 (NN994_01475) - 264233..264883 (+) 651 WP_011226853.1 phosphatase PAP2 family protein -
  NN994_RS01480 (NN994_01480) comR 265078..265977 (+) 900 WP_064355637.1 helix-turn-helix domain-containing protein Regulator
  NN994_RS01485 (NN994_01485) - 266215..266796 (+) 582 Protein_237 cysteine peptidase family C39 domain-containing protein -
  NN994_RS01490 (NN994_01490) comA 266781..267071 (+) 291 WP_194238295.1 ABC transporter transmembrane domain-containing protein Regulator
  NN994_RS01495 (NN994_01495) comA 267414..267623 (+) 210 WP_002946147.1 hypothetical protein Regulator
  NN994_RS01500 (NN994_01500) - 267678..268246 (+) 569 Protein_240 ATP-binding cassette domain-containing protein -
  NN994_RS01505 (NN994_01505) - 268354..268671 (+) 318 WP_011225454.1 DUF805 domain-containing protein -
  NN994_RS01510 (NN994_01510) - 268634..268918 (-) 285 WP_014727318.1 hypothetical protein -
  NN994_RS01515 (NN994_01515) - 269158..270054 (-) 897 WP_224102957.1 urease cluster protein -
  NN994_RS01520 (NN994_01520) - 270459..270974 (+) 516 WP_002949547.1 AmiS/UreI family transporter -
  NN994_RS01525 (NN994_01525) - 270999..271301 (+) 303 WP_002886558.1 urease subunit gamma -
  NN994_RS01530 (NN994_01530) - 271313..271624 (+) 312 WP_002886559.1 urease subunit beta -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10752.77 Da        Isoelectric Point: 7.1599

>NTDB_id=711198 NN994_RS01490 WP_194238295.1 266781..267071(+) (comA) [Streptococcus thermophilus strain UCCSt95]
MLAYLAQQVFTFFKDYLLHRLGNYFSISVILPYIKHVLSLPISFFGSRRTGEITSCFGDANTIIDALASTILSIFLDVTI
VITLAVALILQTVLFF

Nucleotide


Download         Length: 291 bp        

>NTDB_id=711198 NN994_RS01490 WP_194238295.1 266781..267071(+) (comA) [Streptococcus thermophilus strain UCCSt95]
GTGCTCGCCTATCTAGCCCAACAAGTCTTCACTTTTTTCAAAGATTATCTTCTACATCGATTGGGTAATTACTTCTCCAT
TTCTGTTATCCTTCCTTATATCAAGCATGTCCTTTCTTTGCCCATTAGTTTCTTCGGTTCACGTCGTACTGGTGAAATCA
CGTCATGTTTTGGAGATGCCAACACTATTATCGATGCTCTAGCTTCAACAATCTTATCGATTTTCCTAGATGTCACCATT
GTGATAACTTTAGCTGTCGCCCTTATTTTACAAACCGTTCTCTTTTTTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(2-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

59.794

100

0.604
  comA Streptococcus pneumoniae D39

58.763

100

0.594
  comA Streptococcus pneumoniae R6

58.763

100

0.594
  comA Streptococcus mitis SK321

58.763

100

0.594
  comA Streptococcus mitis NCTC 12261

58.763

100

0.594
  comA Streptococcus pneumoniae TIGR4

58.763

100

0.594
  comA Streptococcus pneumoniae Rx1

58.763

100

0.594
  comA/nlmT Streptococcus mutans UA159

57.732

100

0.583