Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NN913_RS12080 Genome accession   NZ_CP101621
Coordinates   2482426..2482863 (-) Length   145 a.a.
NCBI ID   WP_003153088.1    Uniprot ID   -
Organism   Bacillus velezensis strain 906     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2477426..2487863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN913_RS12030 (NN913_12010) sinI 2477811..2477984 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  NN913_RS12035 (NN913_12015) sinR 2478018..2478353 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NN913_RS12040 (NN913_12020) tasA 2478401..2479186 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  NN913_RS12045 (NN913_12025) sipW 2479250..2479834 (-) 585 WP_012117977.1 signal peptidase I SipW -
  NN913_RS12050 (NN913_12030) tapA 2479806..2480477 (-) 672 WP_234949395.1 amyloid fiber anchoring/assembly protein TapA -
  NN913_RS12055 (NN913_12035) - 2480736..2481065 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  NN913_RS12060 (NN913_12040) - 2481105..2481284 (-) 180 WP_003153093.1 YqzE family protein -
  NN913_RS12065 (NN913_12045) comGG 2481341..2481718 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  NN913_RS12070 (NN913_12050) comGF 2481719..2482114 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  NN913_RS12075 (NN913_12055) comGE 2482128..2482442 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  NN913_RS12080 (NN913_12060) comGD 2482426..2482863 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  NN913_RS12085 (NN913_12065) comGC 2482853..2483161 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  NN913_RS12090 (NN913_12070) comGB 2483166..2484203 (-) 1038 WP_063174751.1 competence type IV pilus assembly protein ComGB Machinery gene
  NN913_RS12095 (NN913_12075) comGA 2484190..2485260 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  NN913_RS12100 (NN913_12080) - 2485459..2486409 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  NN913_RS12105 (NN913_12085) - 2486555..2487856 (+) 1302 WP_255763893.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16324.85 Da        Isoelectric Point: 10.3725

>NTDB_id=711022 NN913_RS12080 WP_003153088.1 2482426..2482863(-) (comGD) [Bacillus velezensis strain 906]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPREHKYK
LQSAGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=711022 NN913_RS12080 WP_003153088.1 2482426..2482863(-) (comGD) [Bacillus velezensis strain 906]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAGAGAGCATAAATACAAA
CTGCAGTCAGCCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

54.795

100

0.552