Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpP   Type   Regulator
Locus tag   NNG64_RS16995 Genome accession   NZ_CP101610
Coordinates   3409888..3410484 (+) Length   198 a.a.
NCBI ID   WP_003151513.1    Uniprot ID   I2CAH7
Organism   Bacillus siamensis strain WYJ-E14     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 3404888..3415484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS16980 (NNG64_16935) - 3405600..3407069 (-) 1470 WP_060964198.1 glycoside hydrolase family 32 protein -
  NNG64_RS16985 (NNG64_16940) - 3407084..3408316 (-) 1233 WP_060964197.1 MFS transporter -
  NNG64_RS16990 (NNG64_16945) - 3408681..3409655 (+) 975 WP_060964196.1 LacI family DNA-binding transcriptional regulator -
  NNG64_RS16995 (NNG64_16950) clpP 3409888..3410484 (+) 597 WP_003151513.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NNG64_RS17000 (NNG64_16955) - 3410526..3411386 (-) 861 WP_060964195.1 LysR family transcriptional regulator -
  NNG64_RS17005 (NNG64_16960) - 3411560..3412690 (+) 1131 WP_060964194.1 2-methylaconitate cis-trans isomerase PrpF family protein -
  NNG64_RS17010 (NNG64_16965) - 3412734..3414110 (+) 1377 WP_060964193.1 MFS transporter -
  NNG64_RS17015 (NNG64_16970) - 3414245..3415129 (+) 885 WP_235588372.1 hypothetical protein -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 21831.06 Da        Isoelectric Point: 4.6982

>NTDB_id=710886 NNG64_RS16995 WP_003151513.1 3409888..3410484(+) (clpP) [Bacillus siamensis strain WYJ-E14]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=710886 NNG64_RS16995 WP_003151513.1 3409888..3410484(+) (clpP) [Bacillus siamensis strain WYJ-E14]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA
CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG
AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTACGATACA
ATGCAGTTCATTAAACCGAAAGTATCTACAATCTGCATCGGGATGGCCGCTTCTATGGGAGCATTTTTACTTGCAGCCGG
TGAAAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTCATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA
CAGAAATTGAAATCGCGGCAAAACGCATTCTCTTGCTTCGCGATAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG
CCGCTTGAAGTGATCGAGCGCGATACAGACCGCGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA
TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains


Predicted by InterproScan.

(13-192)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB I2CAH7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

95.96

100

0.96

  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.465

0.662

  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571

  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571

  clpP Streptococcus pneumoniae D39

57.216

97.98

0.561

  clpP Streptococcus pneumoniae Rx1

57.216

97.98

0.561

  clpP Streptococcus pneumoniae R6

57.216

97.98

0.561

  clpP Streptococcus pneumoniae TIGR4

57.216

97.98

0.561

  clpP Lactococcus lactis subsp. cremoris KW2

56.701

97.98

0.556

  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54

  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54

  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

97.98

0.535

  clpP Streptococcus mutans UA159

54.639

97.98

0.535