Detailed information NTG0710813

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: NMH04_RS17000
• Genome accession: NZ_CP101609
• Coordinates: 3272523..3273209 (-)
• Length: 228 a.a.
• NCBI ID: WP_176544677.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain 47
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3267523..3278209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMH04_RS16965 (NMH04_16900)	fliW	3267659..3268093 (-)	435	WP_025208061.1	flagellar assembly protein FliW	-
NMH04_RS16970 (NMH04_16905)	-	3268122..3268700 (-)	579	WP_024719238.1	DUF6470 family protein	-
NMH04_RS16975 (NMH04_16910)	flgL	3268747..3269658 (-)	912	WP_008348257.1	flagellar hook-associated protein FlgL	-
NMH04_RS16980 (NMH04_16915)	flgK	3269667..3271187 (-)	1521	WP_024719239.1	flagellar hook-associated protein FlgK	-
NMH04_RS16985 (NMH04_16920)	-	3271203..3271685 (-)	483	WP_007499977.1	flagellar protein FlgN	-
NMH04_RS16990 (NMH04_16925)	flgM	3271704..3271967 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
NMH04_RS16995 (NMH04_16930)	-	3272047..3272466 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
NMH04_RS17000 (NMH04_16935)	comFC	3272523..3273209 (-)	687	WP_176544677.1	ComF family protein	Machinery gene
NMH04_RS17005 (NMH04_16940)	-	3273206..3273499 (-)	294	WP_008348267.1	late competence development ComFB family protein	-
NMH04_RS17010 (NMH04_16945)	comFA	3273564..3274691 (-)	1128	WP_255816785.1	DEAD/DEAH box helicase	Machinery gene
NMH04_RS17015 (NMH04_16950)	-	3275063..3275905 (-)	843	WP_024719242.1	DegV family protein	-
NMH04_RS17020 (NMH04_16955)	degU	3276117..3276806 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
NMH04_RS17025 (NMH04_16960)	degS	3276871..3278046 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26143.69 Da
• Isoelectric Point: 10.3239

>NTDB_id=710813 NMH04_RS17000 WP_176544677.1 3272523..3273209(-) (comFC) [Bacillus altitudinis strain 47]
MICPICESHFVAAFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWNKRRDFAEILVMNRSVYA
YNDFMKDILARFKFRGDTALADLFKKDVRSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=710813 NMH04_RS17000 WP_176544677.1 3272523..3273209(-) (comFC) [Bacillus altitudinis strain 47]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACTTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCAGGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACGGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGAT
CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (161-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus mitis NCTC 12261	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373