Detailed information NTG0710816

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: NMH04_RS17025
• Genome accession: NZ_CP101609
• Coordinates: 3276871..3278046 (-)
• Length: 391 a.a.
• NCBI ID: WP_024719243.1
• Uniprot ID: A0A081LEM4
• Organism: Bacillus altitudinis strain 47
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3271871..3283046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMH04_RS16995 (NMH04_16930)	-	3272047..3272466 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
NMH04_RS17000 (NMH04_16935)	comFC	3272523..3273209 (-)	687	WP_176544677.1	ComF family protein	Machinery gene
NMH04_RS17005 (NMH04_16940)	-	3273206..3273499 (-)	294	WP_008348267.1	late competence development ComFB family protein	-
NMH04_RS17010 (NMH04_16945)	comFA	3273564..3274691 (-)	1128	WP_255816785.1	DEAD/DEAH box helicase	Machinery gene
NMH04_RS17015 (NMH04_16950)	-	3275063..3275905 (-)	843	WP_024719242.1	DegV family protein	-
NMH04_RS17020 (NMH04_16955)	degU	3276117..3276806 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
NMH04_RS17025 (NMH04_16960)	degS	3276871..3278046 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator
NMH04_RS17030 (NMH04_16965)	-	3278268..3278936 (+)	669	WP_017357860.1	YigZ family protein	-
NMH04_RS17035 (NMH04_16970)	-	3278921..3280018 (+)	1098	WP_007499958.1	LCP family protein	-
NMH04_RS17040 (NMH04_16975)	-	3280057..3281124 (-)	1068	WP_024719245.1	glycosyltransferase family 4 protein	-
NMH04_RS17045 (NMH04_16980)	-	3281259..3282455 (-)	1197	WP_041508115.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45550.27 Da
• Isoelectric Point: 5.8757

>NTDB_id=710816 NMH04_RS17025 WP_024719243.1 3276871..3278046(-) (degS) [Bacillus altitudinis strain 47]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTENERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=710816 NMH04_RS17025 WP_024719243.1 3276871..3278046(-) (degS) [Bacillus altitudinis strain 47]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTCAAGCAAATTAAACAGCAAG
TCAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGATTATCTGAGGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCTTACAAGATGTCATTGAAC
GTTCAGAAACGCTTGTGAGCCAGATCACGGTCGTTCTCAACTACTTGAACCAAGATTTACGTCAGGTCGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATTGAACGAATTTTTAGAGACCGTG
GAACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTCATTCCGACACTGCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAATGCCTAGGGGATACAGAAAATGAAAGAATTGCTTCTCAGTTCGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCTTTAAAGCATTCTGAAGCTGAAGAAATCTCTGTGAAGGTTGAAGTG
ACGAAAGACTTTGTCACCTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAGGATGTTAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTGCTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A0A081LEM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841