Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NMQ06_RS06635 Genome accession   NZ_CP101472
Coordinates   1359242..1359568 (+) Length   108 a.a.
NCBI ID   WP_021339251.1    Uniprot ID   -
Organism   Staphylococcus equorum strain DX2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1354242..1364568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMQ06_RS06605 (NMQ06_06595) - 1354389..1354589 (+) 201 WP_002512453.1 YqgQ family protein -
  NMQ06_RS06610 (NMQ06_06600) - 1355179..1356165 (+) 987 WP_021339255.1 glucokinase -
  NMQ06_RS06615 (NMQ06_06605) - 1356165..1356488 (+) 324 WP_021339254.1 MTH1187 family thiamine-binding protein -
  NMQ06_RS06620 (NMQ06_06610) - 1356490..1357113 (+) 624 WP_002507502.1 MBL fold metallo-hydrolase -
  NMQ06_RS06625 (NMQ06_06615) comGA 1357213..1358187 (+) 975 WP_255157182.1 competence type IV pilus ATPase ComGA Machinery gene
  NMQ06_RS06630 (NMQ06_06620) comGB 1358159..1359226 (+) 1068 WP_021339252.1 competence type IV pilus assembly protein ComGB -
  NMQ06_RS06635 (NMQ06_06625) comGC 1359242..1359568 (+) 327 WP_021339251.1 competence type IV pilus major pilin ComGC Machinery gene
  NMQ06_RS06640 (NMQ06_06630) comGD 1359546..1359992 (+) 447 WP_031265987.1 competence type IV pilus minor pilin ComGD -
  NMQ06_RS06645 (NMQ06_06635) comGF 1359979..1360692 (+) 714 WP_021339249.1 competence type IV pilus minor pilin ComGF -
  NMQ06_RS06650 (NMQ06_06640) - 1360899..1361372 (+) 474 WP_236593604.1 shikimate kinase -
  NMQ06_RS06655 (NMQ06_06645) gcvT 1361551..1362642 (+) 1092 WP_021339246.1 glycine cleavage system aminomethyltransferase GcvT -
  NMQ06_RS06660 (NMQ06_06650) gcvPA 1362660..1364012 (+) 1353 WP_021339245.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12080.23 Da        Isoelectric Point: 9.0691

>NTDB_id=710197 NMQ06_RS06635 WP_021339251.1 1359242..1359568(+) (comGC) [Staphylococcus equorum strain DX2]
MHFLKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELV
SEGYINESQKRCKTGSTISINNGEAVAN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=710197 NMQ06_RS06635 WP_021339251.1 1359242..1359568(+) (comGC) [Staphylococcus equorum strain DX2]
ATGCATTTTTTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAAT
CATAAGTTTATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTC
AAATAAAAATGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTC
TCAGAAGGATATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGC
TAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

69.608

94.444

0.657
  comGC Staphylococcus aureus MW2

69.608

94.444

0.657
  comYC Streptococcus gordonii str. Challis substr. CH1

44.762

97.222

0.435
  comGC/cglC Streptococcus mitis NCTC 12261

40.741

100

0.407
  comGC/cglC Streptococcus mitis SK321

44.565

85.185

0.38
  comGC/cglC Streptococcus pneumoniae R6

43.478

85.185

0.37
  comGC/cglC Streptococcus pneumoniae D39

43.478

85.185

0.37
  comGC/cglC Streptococcus pneumoniae Rx1

43.478

85.185

0.37
  comGC/cglC Streptococcus pneumoniae TIGR4

43.478

85.185

0.37
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

87.037

0.361