Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NM232_RS07595 Genome accession   NZ_CP101399
Coordinates   1377937..1378518 (-) Length   193 a.a.
NCBI ID   WP_227820606.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372937..1383518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS07560 fliW 1373073..1373507 (-) 435 WP_007499985.1 flagellar assembly protein FliW -
  NM232_RS07565 - 1373536..1374114 (-) 579 WP_035701576.1 DUF6470 family protein -
  NM232_RS07570 flgL 1374161..1375072 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  NM232_RS07575 flgK 1375081..1376601 (-) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  NM232_RS07580 - 1376617..1377099 (-) 483 WP_007499977.1 flagellar protein FlgN -
  NM232_RS07585 flgM 1377118..1377381 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NM232_RS07590 - 1377461..1377880 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NM232_RS07595 comFC 1377937..1378518 (-) 582 WP_227820606.1 ComF family protein Machinery gene
  NM232_RS07600 - 1378620..1378913 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  NM232_RS07605 comFA 1378978..1380105 (-) 1128 WP_050826654.1 DEAD/DEAH box helicase Machinery gene
  NM232_RS07610 - 1380477..1381319 (-) 843 WP_024719242.1 DegV family protein -
  NM232_RS07615 degU 1381531..1382220 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NM232_RS07620 degS 1382285..1383460 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22065.88 Da        Isoelectric Point: 10.6068

>NTDB_id=709984 NM232_RS07595 WP_227820606.1 1377937..1378518(-) (comFC) [Bacillus altitudinis strain HM-7]
MKIQCPTCPKCGRAQLNDQLCQDCSRWNKRRDFAEILVMNRSVYAYNDFMKDILARFKFRGDTALADLFKKDVQSAFKRS
FSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVHQSKQSKKRKNERLHQQNLFQLRQSNPIVLKDVVLI
DDIYTTGATVYHAAKILKGAGAKSVSSFTLIRS

Nucleotide


Download         Length: 582 bp        

>NTDB_id=709984 NM232_RS07595 WP_227820606.1 1377937..1378518(-) (comFC) [Bacillus altitudinis strain HM-7]
ATGAAGATTCAATGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATTAAATGATCAATTGTGTCAGGATTGTTCAAGGTG
GAATAAACGACGGGATTTTGCTGAGATTCTTGTGATGAATCGATCTGTTTATGCTTACAACGACTTTATGAAAGATATTC
TAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCT
TTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAAT
GATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACATCAAAGTAAGCAGTCTAAGAAAAGAA
AAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGATCGTTCTAAAGGATGTCGTATTAATC
GATGACATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAGGAGCAGGCGCCAAAAGTGTTTCCTC
TTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(126-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50.259

100

0.503
  comFC/cflB Streptococcus mitis SK321

40

95.855

0.383
  comFC/cflB Streptococcus mitis NCTC 12261

39.459

95.855

0.378
  comFC/cflB Streptococcus pneumoniae TIGR4

38.919

95.855

0.373
  comFC/cflB Streptococcus pneumoniae Rx1

38.919

95.855

0.373
  comFC/cflB Streptococcus pneumoniae D39

38.919

95.855

0.373
  comFC/cflB Streptococcus pneumoniae R6

38.919

95.855

0.373