Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NM232_RS07605 Genome accession   NZ_CP101399
Coordinates   1378978..1380105 (-) Length   375 a.a.
NCBI ID   WP_050826654.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373978..1385105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS07570 flgL 1374161..1375072 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  NM232_RS07575 flgK 1375081..1376601 (-) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  NM232_RS07580 - 1376617..1377099 (-) 483 WP_007499977.1 flagellar protein FlgN -
  NM232_RS07585 flgM 1377118..1377381 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NM232_RS07590 - 1377461..1377880 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NM232_RS07595 comFC 1377937..1378518 (-) 582 WP_227820606.1 ComF family protein Machinery gene
  NM232_RS07600 - 1378620..1378913 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  NM232_RS07605 comFA 1378978..1380105 (-) 1128 WP_050826654.1 DEAD/DEAH box helicase Machinery gene
  NM232_RS07610 - 1380477..1381319 (-) 843 WP_024719242.1 DegV family protein -
  NM232_RS07615 degU 1381531..1382220 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NM232_RS07620 degS 1382285..1383460 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  NM232_RS07625 - 1383682..1384350 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42870.98 Da        Isoelectric Point: 10.3806

>NTDB_id=709985 NM232_RS07605 WP_050826654.1 1378978..1380105(-) (comFA) [Bacillus altitudinis strain HM-7]
MLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVACRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQVQCVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
TESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=709985 NM232_RS07605 WP_050826654.1 1378978..1380105(-) (comFA) [Bacillus altitudinis strain HM-7]
ATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTATGAATGGACGGGTCCACAAAAGAAAGAAACAAGACAAGTTGAATT
AACATGGCAGGGAGAACTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGCTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAGGATGT
TGCTTGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGCTGCCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGCTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGTTCAATGTGTAAA
TGTACAGGGAGTTTCTGCCGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGATACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
ACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAATGGAGACGTGTACTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-180)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.946

98.667

0.552
  comFA/cflA Streptococcus pneumoniae Rx1

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae D39

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae R6

41.243

94.4

0.389
  comFA/cflA Streptococcus pneumoniae TIGR4

40.96

94.4

0.387
  comFA/cflA Streptococcus mitis NCTC 12261

40.678

94.4

0.384
  comFA Latilactobacillus sakei subsp. sakei 23K

38.172

99.2

0.379
  comFA/cflA Streptococcus mitis SK321

39.548

94.4

0.373
  comFA Lactococcus lactis subsp. cremoris KW2

37.705

97.6

0.368