Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NM232_RS07615 Genome accession   NZ_CP101399
Coordinates   1381531..1382220 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain HM-7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1376531..1387220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS07580 - 1376617..1377099 (-) 483 WP_007499977.1 flagellar protein FlgN -
  NM232_RS07585 flgM 1377118..1377381 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NM232_RS07590 - 1377461..1377880 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NM232_RS07595 comFC 1377937..1378518 (-) 582 WP_227820606.1 ComF family protein Machinery gene
  NM232_RS07600 - 1378620..1378913 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  NM232_RS07605 comFA 1378978..1380105 (-) 1128 WP_050826654.1 DEAD/DEAH box helicase Machinery gene
  NM232_RS07610 - 1380477..1381319 (-) 843 WP_024719242.1 DegV family protein -
  NM232_RS07615 degU 1381531..1382220 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NM232_RS07620 degS 1382285..1383460 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  NM232_RS07625 - 1383682..1384350 (+) 669 WP_017357860.1 YigZ family protein -
  NM232_RS07630 - 1384335..1385426 (+) 1092 WP_025208065.1 LCP family protein -
  NM232_RS07635 - 1385463..1386530 (-) 1068 WP_065461156.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=709986 NM232_RS07615 WP_008348273.1 1381531..1382220(-) (degU) [Bacillus altitudinis strain HM-7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=709986 NM232_RS07615 WP_008348273.1 1381531..1382220(-) (degU) [Bacillus altitudinis strain HM-7]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996