Detailed information NTG0709826

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: PFZ59_RS01915
• Genome accession: NZ_CP116393
• Coordinates: 393409..393816 (-)
• Length: 135 a.a.
• NCBI ID: WP_277697387.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SS/UPM/MY/F001
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 388409..398816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFZ59_RS01885 (PFZ59_01885)	-	389123..389674 (-)	552	WP_208580735.1	folate family ECF transporter S component	-
PFZ59_RS01890 (PFZ59_01890)	-	389987..391174 (-)	1188	WP_208580737.1	acetate kinase	-
PFZ59_RS01895 (PFZ59_01895)	comGH	391224..392177 (-)	954	WP_277697384.1	class I SAM-dependent methyltransferase	Machinery gene
PFZ59_RS01900 (PFZ59_01900)	comGG	392227..392745 (-)	519	WP_277697385.1	competence type IV pilus minor pilin ComGG	-
PFZ59_RS01905 (PFZ59_01905)	comGF/cglF	392723..393157 (-)	435	WP_277697386.1	competence type IV pilus minor pilin ComGF	Machinery gene
PFZ59_RS01910 (PFZ59_01910)	comGE	393144..393437 (-)	294	WP_024405248.1	competence type IV pilus minor pilin ComGE	Machinery gene
PFZ59_RS01915 (PFZ59_01915)	comGD	393409..393816 (-)	408	WP_277697387.1	competence type IV pilus minor pilin ComGD	Machinery gene
PFZ59_RS01920 (PFZ59_01920)	comGC	393797..394078 (-)	282	WP_024387069.1	competence type IV pilus major pilin ComGC	Machinery gene
PFZ59_RS01925 (PFZ59_01925)	comGB	394080..395117 (-)	1038	WP_277697388.1	competence type IV pilus assembly protein ComGB	Machinery gene
PFZ59_RS01930 (PFZ59_01930)	comGA	395029..395979 (-)	951	WP_105156412.1	competence type IV pilus ATPase ComGA	Machinery gene
PFZ59_RS01935 (PFZ59_01935)	-	396065..397015 (+)	951	WP_277697389.1	S66 peptidase family protein	-
PFZ59_RS01940 (PFZ59_01940)	-	397050..397415 (-)	366	WP_277697390.1	DUF1033 family protein	-
PFZ59_RS01945 (PFZ59_01945)	-	397488..397943 (-)	456	WP_347176380.1	transposase	-
PFZ59_RS01950 (PFZ59_01950)	-	398008..398337 (-)	330	WP_277696633.1	IS630 transposase-related protein	-
PFZ59_RS01955 (PFZ59_01955)	-	398360..398815 (-)	456	WP_347176380.1	transposase	-

Sequence

Protein

• Length: 135 a.a.
• Molecular weight: 15376.64 Da
• Isoelectric Point: 9.7340

>NTDB_id=709826 PFZ59_RS01915 WP_277697387.1 393409..393816(-) (comGD) [Streptococcus suis strain SS/UPM/MY/F001]
MLRRKNKAFTLFESLLTLLVVSFMAISLSGTVQTVFWSVQEEIFLWEFEAIYKDSQKLAASSHQSVSLTIGEQEVTNGHQ
MVKAPRSLEVLEGKTITFEENGGNSSLSKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide

• Length: 408 bp

>NTDB_id=709826 PFZ59_RS01915 WP_277697387.1 393409..393816(-) (comGD) [Streptococcus suis strain SS/UPM/MY/F001]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGTCTGCTGACCTTGTTGGTTGTCAGCTTTATGGCAATCAG
CCTGTCGGGAACAGTACAAACGGTCTTTTGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTCACACCAGTCAGTTAGTCTAACTATCGGCGAACAAGAAGTGACAAATGGTCATCAG
ATGGTGAAAGCGCCTAGAAGTTTAGAAGTATTAGAAGGGAAGACCATCACATTTGAAGAAAATGGAGGAAATTCCTCACT
GTCTAAAATTCGCTTTCGGCTTAGTCGAAAAACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Streptococcus mutans UA159	46.512	95.556	0.444
comGD	Streptococcus mutans UA140	46.512	95.556	0.444
comGD	Streptococcus gordonii str. Challis substr. CH1	47.244	94.074	0.444
comGD/cglD	Streptococcus pneumoniae Rx1	44.961	95.556	0.43
comGD/cglD	Streptococcus pneumoniae D39	44.961	95.556	0.43
comGD/cglD	Streptococcus pneumoniae R6	44.961	95.556	0.43
comGD/cglD	Streptococcus mitis SK321	44.961	95.556	0.43
comGD/cglD	Streptococcus pneumoniae TIGR4	44.961	95.556	0.43
comGD/cglD	Streptococcus mitis NCTC 12261	44.186	95.556	0.422
comGD	Lactococcus lactis subsp. cremoris KW2	38.281	94.815	0.363