Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   PFZ59_RS01895 Genome accession   NZ_CP116393
Coordinates   391224..392177 (-) Length   317 a.a.
NCBI ID   WP_277697384.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386224..397177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS01870 (PFZ59_01870) - 386274..386558 (-) 285 WP_015646299.1 DUF4651 domain-containing protein -
  PFZ59_RS01875 (PFZ59_01875) pepA 386705..387766 (+) 1062 WP_208580731.1 glutamyl aminopeptidase -
  PFZ59_RS01880 (PFZ59_01880) - 387811..389067 (-) 1257 WP_277697383.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  PFZ59_RS01885 (PFZ59_01885) - 389123..389674 (-) 552 WP_208580735.1 folate family ECF transporter S component -
  PFZ59_RS01890 (PFZ59_01890) - 389987..391174 (-) 1188 WP_208580737.1 acetate kinase -
  PFZ59_RS01895 (PFZ59_01895) comGH 391224..392177 (-) 954 WP_277697384.1 class I SAM-dependent methyltransferase Machinery gene
  PFZ59_RS01900 (PFZ59_01900) comGG 392227..392745 (-) 519 WP_277697385.1 competence type IV pilus minor pilin ComGG -
  PFZ59_RS01905 (PFZ59_01905) comGF/cglF 392723..393157 (-) 435 WP_277697386.1 competence type IV pilus minor pilin ComGF Machinery gene
  PFZ59_RS01910 (PFZ59_01910) comGE 393144..393437 (-) 294 WP_024405248.1 competence type IV pilus minor pilin ComGE Machinery gene
  PFZ59_RS01915 (PFZ59_01915) comGD 393409..393816 (-) 408 WP_277697387.1 competence type IV pilus minor pilin ComGD Machinery gene
  PFZ59_RS01920 (PFZ59_01920) comGC 393797..394078 (-) 282 WP_024387069.1 competence type IV pilus major pilin ComGC Machinery gene
  PFZ59_RS01925 (PFZ59_01925) comGB 394080..395117 (-) 1038 WP_277697388.1 competence type IV pilus assembly protein ComGB Machinery gene
  PFZ59_RS01930 (PFZ59_01930) comGA 395029..395979 (-) 951 WP_105156412.1 competence type IV pilus ATPase ComGA Machinery gene
  PFZ59_RS01935 (PFZ59_01935) - 396065..397015 (+) 951 WP_277697389.1 S66 peptidase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35754.88 Da        Isoelectric Point: 4.4571

>NTDB_id=709823 PFZ59_RS01895 WP_277697384.1 391224..392177(-) (comGH) [Streptococcus suis strain SS/UPM/MY/F001]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLIINNNKTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPSLFGKAAMAKSIFVLQRKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=709823 PFZ59_RS01895 WP_277697384.1 391224..392177(-) (comGH) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTATTATCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCGCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCTGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
TTACTATCCAGATGACCAGATTGCTAGCCGCTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTGAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGCCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAGTCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAGGAAAGCAGCTAGACCTCTAGCGCCGTTTGTTTATCCCTTGCAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterProScan.

N-6 DNA Methylase (N6_Mtase)

(68-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA140

60.443

99.685

0.603
  comGH Streptococcus mutans UA159

60.127

99.685

0.599