Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   PFZ59_RS01925 Genome accession   NZ_CP116393
Coordinates   394080..395117 (-) Length   345 a.a.
NCBI ID   WP_277697388.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389080..400117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS01885 (PFZ59_01885) - 389123..389674 (-) 552 WP_208580735.1 folate family ECF transporter S component -
  PFZ59_RS01890 (PFZ59_01890) - 389987..391174 (-) 1188 WP_208580737.1 acetate kinase -
  PFZ59_RS01895 (PFZ59_01895) comGH 391224..392177 (-) 954 WP_277697384.1 class I SAM-dependent methyltransferase Machinery gene
  PFZ59_RS01900 (PFZ59_01900) comGG 392227..392745 (-) 519 WP_277697385.1 competence type IV pilus minor pilin ComGG -
  PFZ59_RS01905 (PFZ59_01905) comGF/cglF 392723..393157 (-) 435 WP_277697386.1 competence type IV pilus minor pilin ComGF Machinery gene
  PFZ59_RS01910 (PFZ59_01910) comGE 393144..393437 (-) 294 WP_024405248.1 competence type IV pilus minor pilin ComGE Machinery gene
  PFZ59_RS01915 (PFZ59_01915) comGD 393409..393816 (-) 408 WP_277697387.1 competence type IV pilus minor pilin ComGD Machinery gene
  PFZ59_RS01920 (PFZ59_01920) comGC 393797..394078 (-) 282 WP_024387069.1 competence type IV pilus major pilin ComGC Machinery gene
  PFZ59_RS01925 (PFZ59_01925) comGB 394080..395117 (-) 1038 WP_277697388.1 competence type IV pilus assembly protein ComGB Machinery gene
  PFZ59_RS01930 (PFZ59_01930) comGA 395029..395979 (-) 951 WP_105156412.1 competence type IV pilus ATPase ComGA Machinery gene
  PFZ59_RS01935 (PFZ59_01935) - 396065..397015 (+) 951 WP_277697389.1 S66 peptidase family protein -
  PFZ59_RS01940 (PFZ59_01940) - 397050..397415 (-) 366 WP_277697390.1 DUF1033 family protein -
  PFZ59_RS01945 (PFZ59_01945) - 397488..397943 (-) 456 WP_347176380.1 transposase -
  PFZ59_RS01950 (PFZ59_01950) - 398008..398337 (-) 330 WP_277696633.1 IS630 transposase-related protein -
  PFZ59_RS01955 (PFZ59_01955) - 398360..398815 (-) 456 WP_347176380.1 transposase -
  PFZ59_RS01960 (PFZ59_01960) - 398880..399209 (-) 330 WP_277696633.1 IS630 transposase-related protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38987.95 Da        Isoelectric Point: 9.3130

>NTDB_id=709828 PFZ59_RS01925 WP_277697388.1 394080..395117(-) (comGB) [Streptococcus suis strain SS/UPM/MY/F001]
MRKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVSLAEVHGNTSLSLGHIQSYLENVSKVRKKLIEVATYPVILLGFLFLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSCLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGHDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=709828 PFZ59_RS01925 WP_277697388.1 394080..395117(-) (comGB) [Streptococcus suis strain SS/UPM/MY/F001]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCCAGCGGTTTTCATCTGGGTGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCGGATTTACGGTTTTCAGATGCGGTAGTCACACAGGTGTCTCTGGCAGAAGTTCATGGCAATACCAGTTTGAGTTTGGG
TCATATTCAGTCCTATCTGGAAAATGTCAGCAAGGTGCGTAAAAAATTGATTGAGGTGGCAACTTATCCAGTTATCTTGC
TAGGTTTTCTGTTCTTGATTATGCTGGGTTTGAAAAACTATCTTTTACCTCAGTTGGAGGAAGGTAATGCAGCGACCATG
CTGATTAATCATCTACCAACCATCTTTTTATCCCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAACAAAATCAAGGTCTTTTCCTGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGTTTGGACCTGCCGCAGATTGTAGGCCTGATGCAGGAG
CAGCAGTCGCAGCTCTTTCGGGAGATTGGTCATGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTGGCGAGT
TGACAGTTTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGTTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Streptococcus gordonii str. Challis substr. CH1

63.158

99.13

0.626
  comGB/cglB Streptococcus mitis NCTC 12261

60.299

97.101

0.586
  comGB Streptococcus mutans UA140

58.601

99.42

0.583
  comGB Streptococcus mutans UA159

58.601

99.42

0.583
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae D39

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae R6

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae TIGR4

59.701

97.101

0.58
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.681

0.496