Detailed information NTG0709144

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: XCCCN08v2_RS05215
• Genome accession: NZ_CP101176
• Coordinates: 1237570..1238826 (-)
• Length: 418 a.a.
• NCBI ID: WP_075285409.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain CN08
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1224045..1248622	1237570..1238826	within	0

Gene organization within MGE regions

Location: 1224045..1248622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XCCCN08v2_RS05140	-	1224045..1224461 (+)	417	WP_227971334.1	hypothetical protein	-
XCCCN08v2_RS05145	-	1224751..1224981 (-)	231	WP_157769280.1	hypothetical protein	-
XCCCN08v2_RS05150	-	1225045..1225200 (+)	156	WP_075285405.1	hypothetical protein	-
XCCCN08v2_RS05155	-	1225377..1225772 (+)	396	WP_016945003.1	hypothetical protein	-
XCCCN08v2_RS05160	-	1225863..1226255 (+)	393	WP_012437593.1	H-NS family nucleoid-associated regulatory protein	-
XCCCN08v2_RS05165	glgX	1226780..1228909 (-)	2130	WP_016945001.1	glycogen debranching protein GlgX	-
XCCCN08v2_RS05170	rimK	1229402..1230277 (+)	876	WP_016945000.1	30S ribosomal protein S6--L-glutamate ligase	-
XCCCN08v2_RS05175	-	1230927..1231604 (+)	678	WP_003490678.1	response regulator transcription factor	-
XCCCN08v2_RS05180	-	1231597..1232931 (+)	1335	WP_162808569.1	HAMP domain-containing sensor histidine kinase	-
XCCCN08v2_RS05185	-	1233074..1233565 (-)	492	WP_011038220.1	GNAT family N-acetyltransferase	-
XCCCN08v2_RS05190	-	1233562..1233852 (-)	291	WP_011038219.1	DUF1778 domain-containing protein	-
XCCCN08v2_RS05195	-	1233927..1234328 (-)	402	WP_040940795.1	SymE family type I addiction module toxin	-
XCCCN08v2_RS05200	-	1234471..1235579 (+)	1109	WP_087942068.1	IS3 family transposase	-
XCCCN08v2_RS05205	coaE	1236064..1236687 (-)	624	WP_075285407.1	dephospho-CoA kinase	-
XCCCN08v2_RS05210	-	1236701..1237564 (-)	864	WP_075285408.1	A24 family peptidase	-
XCCCN08v2_RS05215	pilC	1237570..1238826 (-)	1257	WP_075285409.1	type II secretion system F family protein	Machinery gene
XCCCN08v2_RS05220	-	1239163..1239612 (+)	450	WP_075285410.1	pilin	-
XCCCN08v2_RS05225	-	1239728..1240102 (+)	375	WP_269467167.1	pilin	-
XCCCN08v2_RS05230	pilB	1240161..1241867 (+)	1707	WP_187305920.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XCCCN08v2_RS05235	pilR	1242285..1243679 (-)	1395	WP_162808570.1	sigma-54 dependent transcriptional regulator	Regulator
XCCCN08v2_RS05240	-	1243889..1245499 (-)	1611	WP_040940804.1	HAMP domain-containing sensor histidine kinase	-
XCCCN08v2_RS05245	sucC	1245733..1246902 (+)	1170	WP_011038209.1	ADP-forming succinate--CoA ligase subunit beta	-
XCCCN08v2_RS05250	sucD	1246927..1247802 (+)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
XCCCN08v2_RS05255	-	1247906..1248316 (+)	411	WP_029628876.1	DNA-binding protein	-
XCCCN08v2_RS05260	-	1248320..1248622 (+)	303	WP_011038207.1	type II toxin-antitoxin system RelE/ParE family toxin	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45523.96 Da
• Isoelectric Point: 10.3308

>NTDB_id=709144 XCCCN08v2_RS05215 WP_075285409.1 1237570..1238826(-) (pilC) [Xanthomonas campestris pv. campestris strain CN08]
MAAVRGVVKTKPTLQLEQASPFVWQGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVSRHPVQFDELYRNLVKAGEGAGVLET
VLDTIATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEDVFKGFGAELPAFTQIIVNMSRFMVSWWWLI
LFVVVVAVIGFIFAYKRSPSMQHGMDRVILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYETA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=709144 XCCCN08v2_RS05215 WP_075285409.1 1237570..1238826(-) (pilC) [Xanthomonas campestris pv. campestris strain CN08]
ATGGCAGCAGTACGTGGTGTGGTCAAGACGAAGCCGACCTTGCAATTAGAGCAGGCTAGTCCGTTTGTCTGGCAGGGAAC
GGACAAGCGCGGCGTGAAGATGAAGGGGGAGCAGACGGCAAAAAACGCCAATCTGCTACGTGCGGAACTCCGCAGGCAGG
GGATAACGCCTACTGTTGTAAAGGTAAAGCCGAAGCCGTTATTTGGCGCGGCTGGCAAGAAGGTTTCCGCTAAGGACATC
TCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCCGGAGTTCCGATCGTTGGGGCGCTTGAGATCATCGGCAGCGG
CCAGAAAAATCCGCGCATGCGGAACATGGTTGGGCAAATCCGCGCAGACATCGAAGGCGGTTCTTCACTGCATGAAGCAG
TCAGCAGGCACCCCGTGCAGTTTGACGAGCTCTACAGGAACCTCGTTAAAGCCGGCGAAGGTGCGGGCGTTTTGGAGACG
GTGCTGGACACCATTGCGACATACAAGGAGAACATCGAGGCGCTGAAGGGCAAGATCAAAAAAGCCTTGTTCTATCCGGC
AATGGTTGTCGCAGTAGCACTAATCGTCAGCGCGATTCTGCTCATCTTTGTGGTACCTCAATTTGAGGACGTGTTCAAGG
GCTTTGGCGCGGAACTGCCCGCCTTCACTCAGATCATTGTGAACATGTCGCGGTTCATGGTGTCGTGGTGGTGGCTGATT
CTTTTTGTTGTGGTCGTCGCCGTCATTGGCTTCATCTTCGCCTACAAACGCTCCCCCTCAATGCAACACGGCATGGACCG
GGTCATCCTCAAAGTGCCGATCATCGGCCAAATCATGCACAACAGTTCCATTGCACGTTTTGCACGGACGACTGCAGTGA
CATTCAAGGCAGGCGTACCATTGGTCGAAGCATTGAGCATCGTGGCTGGCGCAACCGGCAACTCGGTATACGAGACTGCC
GTACTACGGATGCGGGACGATGTGTCAGTGGGCTACCCTGTGAACATGGCAATGAAACAGGTCAATCTGTTCCCGCACAT
GGTGGTGCAGATGACTGCCATCGGCGAAGAAGCGGGCGCACTGGATGCCATGCTGTTCAAGGTAGCGGAGTACTTCGAGC
AAGAGGTCAACAATGCGGTCGACGCGCTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGAACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	52.513	95.215	0.5
pilC	Legionella pneumophila strain ERS1305867	51.478	97.129	0.5
pilC	Acinetobacter baylyi ADP1	50.882	94.976	0.483
pilC	Acinetobacter baumannii D1279779	50.378	94.976	0.478
pilG	Neisseria gonorrhoeae MS11	43.467	95.215	0.414
pilG	Neisseria meningitidis 44/76-A	42.965	95.215	0.409
pilC	Vibrio cholerae strain A1552	41.363	98.325	0.407
pilC	Vibrio campbellii strain DS40M4	40.399	95.933	0.388