Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | K6J61_RS02915 | Genome accession | NZ_AP018769 |
| Coordinates | 590220..590633 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain CHBN-II-6 isolate 12H01 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 585220..595633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J61_RS02895 (CHBNII6_05470) | - | 585708..588302 (-) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
| K6J61_RS02900 (CHBNII6_05480) | comA | 588401..589198 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| K6J61_RS02905 (CHBNII6_05490) | comB | 589199..589705 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| K6J61_RS02910 (CHBNII6_05500) | comC | 589702..590223 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J61_RS02915 (CHBNII6_05510) | comD | 590220..590633 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J61_RS02920 (CHBNII6_05520) | comE | 590643..591980 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J61_RS02925 (CHBNII6_05530) | - | 591993..592679 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J61_RS02930 (CHBNII6_05540) | nfuA | 592755..593351 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J61_RS02935 (CHBNII6_05550) | nudC | 593418..594212 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| K6J61_RS02940 (CHBNII6_05560) | - | 594248..594838 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| K6J61_RS02945 (CHBNII6_05570) | - | 594978..595250 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=70895 K6J61_RS02915 WP_011272047.1 590220..590633(+) (comD) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=70895 K6J61_RS02915 WP_011272047.1 590220..590633(+) (comD) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |