Detailed information NTG0070896

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: H7680_RS00360
• Genome accession: NZ_AP023394
• Coordinates: 57841..58839 (+)
• Length: 332 a.a.
• NCBI ID: WP_003059357.1
• Uniprot ID: A0ABU0A8X3
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain 159
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 52841..63839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7680_RS00340 (SDSE159_00350)	-	53770..55026 (+)	1257	WP_003055555.1	DUF4041 domain-containing protein	-
H7680_RS00345 (SDSE159_00360)	-	55019..55228 (+)	210	WP_014611912.1	hypothetical protein	-
H7680_RS00350 (SDSE159_00370)	purB	55277..56569 (+)	1293	WP_003056595.1	adenylosuccinate lyase	-
H7680_RS00355 (SDSE159_00380)	comR	56711..57622 (+)	912	WP_003060893.1	XRE family transcriptional regulator	Regulator
H7680_RS10365	comS	57709..57807 (+)	99	WP_014611913.1	quorum-sensing system DWW-type pheromone	Regulator
H7680_RS00360 (SDSE159_00390)	ruvB	57841..58839 (+)	999	WP_003059357.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
H7680_RS00365 (SDSE159_00400)	-	58974..59405 (+)	432	WP_003059365.1	low molecular weight protein-tyrosine-phosphatase	-
H7680_RS00370 (SDSE159_00410)	-	59434..59835 (+)	402	WP_003049089.1	MORN repeat-containing protein	-
H7680_RS00375 (SDSE159_00420)	-	59832..61607 (+)	1776	WP_003059359.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37292.76 Da
• Isoelectric Point: 4.5556

>NTDB_id=70896 H7680_RS00360 WP_003059357.1 57841..58839(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MARILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVMLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATEK
AYRHLGYPYPSK

Nucleotide

• Length: 999 bp

>NTDB_id=70896 H7680_RS00360 WP_003059357.1 57841..58839(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGGCTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAACTTGTTGAGCGAACGCTTCGTCCGCAGTATTTACGTGA
GTACATTGGGCAAGATAAGGTTAAGGAACAATTAACCATTTTTATTGAAGCGGCTAAGCTCCGTGATGAATCTTTAGATC
ATGTGATGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGGGGTTAACTTG
AAGCAAACTTCAGGACCAGCGATTGAGAAGGCTGGTGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGACA
TTATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTGCCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTCGAACGAACAGCCGATATTTTTGACATGGAAATTGTTCACGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGATCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
CACCATGATTGAAATGTATCAGGGTGGACCTGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTGGCGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATATCCGTCTAAGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.458	100	0.895
ruvB	Streptococcus pneumoniae R6	89.157	100	0.892
ruvB	Streptococcus pneumoniae D39	89.157	100	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.756	98.795	0.59
ruvB	Helicobacter pylori 26695	50.307	98.193	0.494
ruvB	Synechocystis sp. PCC 6803	49.686	95.783	0.476