Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | K6J54_RS03925 | Genome accession | NZ_AP018766 |
| Coordinates | 779563..780069 (-) | Length | 168 a.a. |
| NCBI ID | WP_042593471.1 | Uniprot ID | A0A0D0HQS7 |
| Organism | Haemophilus influenzae strain CHBN-II-3 isolate 13H41 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 774563..785069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J54_RS03890 (CHBNII3_07390) | raiA | 774796..775119 (-) | 324 | WP_012054908.1 | ribosome-associated translation inhibitor RaiA | - |
| K6J54_RS03895 (CHBNII3_07400) | bamC | 775292..775939 (-) | 648 | WP_042593469.1 | outer membrane protein assembly factor BamC | - |
| K6J54_RS03900 (CHBNII3_07410) | dapA | 776050..776946 (-) | 897 | WP_042593470.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| K6J54_RS03905 (CHBNII3_07420) | bcp | 777047..777514 (+) | 468 | WP_005668209.1 | thioredoxin-dependent thiol peroxidase | - |
| K6J54_RS03910 (CHBNII3_07430) | exbB | 777682..778134 (+) | 453 | WP_005648856.1 | TonB-system energizer ExbB | - |
| K6J54_RS03915 (CHBNII3_07440) | exbD | 778138..778581 (+) | 444 | WP_005648853.1 | TonB system transport protein ExbD | - |
| K6J54_RS03920 (CHBNII3_07450) | - | 778591..779385 (+) | 795 | WP_005692201.1 | energy transducer TonB | - |
| K6J54_RS03925 (CHBNII3_07460) | ssb | 779563..780069 (-) | 507 | WP_042593471.1 | single-stranded DNA-binding protein | Machinery gene |
| K6J54_RS03930 (CHBNII3_07470) | uvrA | 780222..783053 (+) | 2832 | WP_042593472.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18753.50 Da Isoelectric Point: 5.2649
>NTDB_id=70802 K6J54_RS03925 WP_042593471.1 779563..780069(-) (ssb) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=70802 K6J54_RS03925 WP_042593471.1 779563..780069(-) (ssb) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
67.778 |
100 |
0.726 |
| ssb | Vibrio cholerae strain A1552 |
55.495 |
100 |
0.601 |
| ssb | Neisseria meningitidis MC58 |
50.289 |
100 |
0.518 |
| ssb | Neisseria gonorrhoeae MS11 |
50.289 |
100 |
0.518 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.27 |
100 |
0.363 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.057 |
100 |
0.363 |