Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NLV76_RS17600 Genome accession   NZ_CP100752
Coordinates   3426107..3426703 (+) Length   198 a.a.
NCBI ID   WP_254501578.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3421107..3431703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS17570 (NLV76_17570) aspP 3422068..3423630 (+) 1563 WP_044159259.1 aspartate/proton symporter AspP -
  NLV76_RS17575 (NLV76_17575) - 3423726..3424310 (+) 585 WP_254501577.1 TetR family transcriptional regulator -
  NLV76_RS17580 (NLV76_17580) - 3424388..3424723 (+) 336 WP_044160350.1 multidrug efflux SMR transporter -
  NLV76_RS17585 (NLV76_17585) - 3424723..3425037 (+) 315 WP_024122952.1 multidrug efflux SMR transporter -
  NLV76_RS17590 (NLV76_17590) - 3425083..3425598 (-) 516 WP_024122953.1 DUF3231 family protein -
  NLV76_RS17600 (NLV76_17600) clpP 3426107..3426703 (+) 597 WP_254501578.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NLV76_RS17605 (NLV76_17605) pgmB 3426821..3427501 (-) 681 WP_199398114.1 beta-phosphoglucomutase -
  NLV76_RS17610 (NLV76_17610) - 3427498..3429183 (-) 1686 WP_254501579.1 alpha-glucosidase -
  NLV76_RS17615 (NLV76_17615) - 3429176..3431449 (-) 2274 WP_254501580.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21871.12 Da        Isoelectric Point: 4.7048

>NTDB_id=706710 NLV76_RS17600 WP_254501578.1 3426107..3426703(+) (clpP) [Bacillus halotolerans strain MEC_B301]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGPQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNSEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=706710 NLV76_RS17600 WP_254501578.1 3426107..3426703(+) (clpP) [Bacillus halotolerans strain MEC_B301]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTTTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCGG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCTTGCTTGCTGCCGG
AGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGACCTCAAGGTCAAGCGA
CAGAAATTGAAATTGCCGCGAAACGTATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAACGTACTGGCCAG
CCTCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTCTGACTCGCAACTCAGAAGATCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

95.96

100

0.96
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae Rx1

58.247

97.98

0.571
  clpP Streptococcus pneumoniae D39

58.247

97.98

0.571
  clpP Streptococcus pneumoniae R6

58.247

97.98

0.571
  clpP Streptococcus pneumoniae TIGR4

58.247

97.98

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.67

97.98

0.545
  clpP Streptococcus mutans UA159

55.155

97.98

0.54