Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FGCSD_RS07855 Genome accession   NZ_AP018726
Coordinates   1576174..1576884 (-) Length   236 a.a.
NCBI ID   WP_003049952.1    Uniprot ID   A0A9X9SIG1
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571174..1581884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS07835 (FGCSD_1523) - 1571825..1572847 (-) 1023 WP_129555386.1 IS30 family transposase -
  FGCSD_RS07840 (FGCSD_1524) - 1573059..1573934 (+) 876 WP_129556026.1 helix-turn-helix transcriptional regulator -
  FGCSD_RS07845 (FGCSD_1525) vicX 1574016..1574825 (-) 810 WP_129556027.1 MBL fold metallo-hydrolase Regulator
  FGCSD_RS07850 (FGCSD_1526) vicK 1574829..1576181 (-) 1353 WP_129556028.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FGCSD_RS07855 (FGCSD_1527) vicR 1576174..1576884 (-) 711 WP_003049952.1 response regulator YycF Regulator
  FGCSD_RS07860 (FGCSD_1528) - 1577143..1577937 (+) 795 WP_003057217.1 amino acid ABC transporter ATP-binding protein -
  FGCSD_RS07865 (FGCSD_1529) - 1577937..1578737 (+) 801 WP_129556029.1 transporter substrate-binding domain-containing protein -
  FGCSD_RS07870 (FGCSD_1530) - 1578751..1579452 (+) 702 WP_129556030.1 amino acid ABC transporter permease -
  FGCSD_RS07875 (FGCSD_1531) - 1579467..1580114 (+) 648 WP_129556031.1 amino acid ABC transporter permease -
  FGCSD_RS07880 (FGCSD_1532) - 1580210..1581205 (-) 996 WP_111715699.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27029.90 Da        Isoelectric Point: 4.9981

>NTDB_id=70593 FGCSD_RS07855 WP_003049952.1 1576174..1576884(-) (vicR) [Streptococcus dysgalactiae strain Kdys0611]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVE
LTHREFELLHHLANHMGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=70593 FGCSD_RS07855 WP_003049952.1 1576174..1576884(-) (vicR) [Streptococcus dysgalactiae strain Kdys0611]
ATGAAAAAAATACTGATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAACTTGACAAAAGAAGGTTATGA
CATTGTGACCGCTTTTGATGGCCGTGAAGCTGTTACCGTGTTTGAAGACGAAAAACCGGATTTAATTATTCTTGATTTGA
TGTTACCGGAATTGGACGGTCTTGAAGTGGCCAAAGAAATCCGTAAAACCAGTCATGTGCCGATTATTATGCTGTCGGCT
AAGGATAGTGAGTTTGACAAGGTCATTGGCCTTGAAATTGGGGCAGATGATTATGTTACCAAACCCTTTTCAAATCGTGA
ACTATTAGCGCGTGTCAAGGCTCATTTACGTCGAACAGAAACGATCGAAACAGCCGTAGCAGAGGAAAATGCTTCTTCAG
GTTCACAAGAGTTAACCATTGGTAATTTACAAATTTTACCAGATGCTTTTGTGGCTAAAAAACATGGCAAAGAAGTGGAA
TTAACCCATCGTGAATTTGAATTATTACACCACCTGGCCAATCATATGGGTCAAGTGATGACACGAGAGCACTTGCTTGA
GACGGTTTGGGGCTATGATTACTTTGGCGATGTCCGTACTGTTGACGTGACAGTTCGTCGTCTGCGTGAAAAAATTGAAG
ATACACCAAGCCGTCCCGAATATATTTTAACGAGACGCGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.487

99.153

0.788
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.828

98.305

0.441
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

37.712

100

0.377

Multiple sequence alignment