Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL386_RS01125 Genome accession   NZ_AP018725
Coordinates   228786..229811 (-) Length   341 a.a.
NCBI ID   WP_126452453.1    Uniprot ID   -
Organism   Sulfuriflexus mobilis strain aks1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223786..234811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL386_RS01105 rpoH 224667..225518 (-) 852 WP_126452445.1 RNA polymerase sigma factor RpoH -
  EL386_RS01110 - 225661..227022 (-) 1362 WP_172597572.1 diguanylate cyclase -
  EL386_RS01115 ftsX 227153..228076 (-) 924 WP_126452449.1 permease-like cell division protein FtsX -
  EL386_RS01120 ftsE 228073..228750 (-) 678 WP_126452451.1 cell division ATP-binding protein FtsE -
  EL386_RS01125 pilA 228786..229811 (-) 1026 WP_126452453.1 signal recognition particle-docking protein FtsY Machinery gene
  EL386_RS01130 - 229971..231326 (+) 1356 WP_420856736.1 M16 family metallopeptidase -
  EL386_RS01135 - 231323..232627 (+) 1305 WP_126452455.1 insulinase family protein -
  EL386_RS01140 - 232776..233702 (+) 927 WP_126457181.1 AAA family ATPase -
  EL386_RS01145 - 233699..234694 (+) 996 WP_126452457.1 DUF58 domain-containing protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36438.49 Da        Isoelectric Point: 4.8891

>NTDB_id=70532 EL386_RS01125 WP_126452453.1 228786..229811(-) (pilA) [Sulfuriflexus mobilis strain aks1]
MFGFGKKQDNTPKTPEQAQTPASTAPDGAPEDEGQQKAGLFARLKQGLSKTRSGLGDAVANLVLGEKEIDDELLEDLETQ
LLTADVGIDATRQIIDDLTARVARKQLKDGDALLAALREDLAALLTPCSQPLQIPSTGGPFVILMIGVNGVGKTTTIGKL
ARRFQQQGHSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSASVIFDALQSAQSKNIDILIADTAGRLHTKDNL
MEELVKIKRVLGKLDINAPHETMIVLDATTGQNALVQTEQFHAAIGLTGITLTKLDGTAKGGIIFSIANKTKLPIRYIGV
GEGIEDLRPFDADEFSRALFE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=70532 EL386_RS01125 WP_126452453.1 228786..229811(-) (pilA) [Sulfuriflexus mobilis strain aks1]
ATGTTTGGTTTCGGAAAAAAGCAAGACAATACACCCAAAACGCCTGAACAGGCGCAAACCCCGGCCTCGACAGCCCCCGA
TGGTGCCCCGGAAGACGAAGGCCAGCAAAAGGCTGGTCTGTTTGCACGCCTGAAGCAGGGCCTGAGCAAGACCCGCTCCG
GGCTCGGAGATGCCGTCGCTAACCTGGTGCTGGGCGAAAAGGAGATCGATGACGAGCTGCTCGAAGACCTCGAGACACAG
CTGCTGACCGCCGATGTCGGTATCGATGCCACCCGCCAGATCATCGATGACCTCACCGCGCGTGTGGCCCGCAAACAGCT
CAAGGACGGCGATGCCCTGCTCGCCGCGCTACGGGAAGACCTCGCCGCCCTGCTCACGCCCTGCAGCCAGCCACTGCAAA
TACCTTCGACGGGCGGCCCGTTCGTGATCCTCATGATTGGCGTCAATGGTGTCGGCAAGACCACGACCATCGGCAAGCTC
GCCAGGCGTTTTCAGCAACAGGGCCACTCGGTCATGCTCGCCGCCGGCGATACCTTCCGTGCCGCGGCGGTGGAACAGTT
ACAGGTCTGGGGCGAACGCAATAATATCCCCGTGGTCGCGCAACATACGGGGGCCGATTCGGCCTCGGTGATCTTTGATG
CCCTGCAATCGGCGCAGTCAAAAAACATCGATATCTTGATCGCCGATACCGCCGGCCGCCTGCATACCAAGGACAACCTC
ATGGAGGAACTGGTCAAGATCAAACGCGTGCTCGGCAAGCTCGATATAAATGCCCCGCATGAAACAATGATCGTGCTCGA
TGCGACGACCGGACAGAACGCGCTGGTCCAGACCGAACAGTTCCACGCCGCGATTGGCCTCACCGGCATCACCCTGACCA
AACTTGATGGCACGGCAAAAGGCGGTATTATATTTTCCATTGCCAACAAGACGAAGTTACCGATTCGCTATATTGGTGTC
GGTGAGGGCATTGAAGACCTGCGTCCGTTTGATGCCGATGAGTTCAGCCGGGCGCTGTTTGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(140-340)

SRP54-type protein, helical bundle domain (SRP54_N)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.026

90.029

0.504

Multiple sequence alignment