Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NI387_RS03110 Genome accession   NZ_CP099921
Coordinates   644130..645353 (-) Length   407 a.a.
NCBI ID   WP_062866933.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM25     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 639130..650353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI387_RS03070 (NI387_03075) rpsP 639185..639433 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  NI387_RS03075 (NI387_03080) rimM 639462..640011 (+) 550 Protein_524 ribosome maturation factor RimM -
  NI387_RS03080 (NI387_03085) trmD 640039..640782 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NI387_RS03085 (NI387_03090) rplS 640824..641177 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  NI387_RS03090 (NI387_03095) yacG 641551..641745 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  NI387_RS03095 (NI387_03100) zapD 641814..642554 (-) 741 WP_015297254.1 cell division protein ZapD -
  NI387_RS03100 (NI387_03105) coaE 642582..643196 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  NI387_RS03105 (NI387_03110) - 643197..644065 (-) 869 Protein_530 A24 family peptidase -
  NI387_RS03110 (NI387_03115) pilC 644130..645353 (-) 1224 WP_062866933.1 type II secretion system F family protein Machinery gene
  NI387_RS03115 (NI387_03120) pilB 645378..647063 (-) 1686 WP_062866934.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NI387_RS03120 (NI387_03125) - 647072..647506 (-) 435 WP_025633759.1 type IV pilin protein -
  NI387_RS03125 (NI387_03130) nadC 647770..648657 (-) 888 WP_021486792.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NI387_RS03130 (NI387_03135) ampD 648750..649301 (+) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45195.35 Da        Isoelectric Point: 10.3996

>NTDB_id=702593 NI387_RS03110 WP_062866933.1 644130..645353(-) (pilC) [Vibrio parahaemolyticus strain BM25]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSMRSDSFRLMLNRSALKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=702593 NI387_RS03110 WP_062866933.1 644130..645353(-) (pilC) [Vibrio parahaemolyticus strain BM25]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATATCAACGATGCTG
GTAACTGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTATGCGTTCTGACTCTTTTCGCTTAATGCTCAACCGCTCTGCGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCCTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.995

100

0.86
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.25

98.28

0.415
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.148

99.754

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398