Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NIY05_RS08935 Genome accession   NZ_CP099857
Coordinates   1871942..1872322 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A54R     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866942..1877322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY05_RS08905 (NIY05_08905) kdsB 1867845..1868606 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NIY05_RS08910 (NIY05_08910) - 1868618..1869598 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  NIY05_RS08915 (NIY05_08915) - 1869610..1869951 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  NIY05_RS08920 (NIY05_08920) - 1869969..1870742 (+) 774 WP_000497298.1 TatD family hydrolase -
  NIY05_RS08925 (NIY05_08925) - 1870780..1871388 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  NIY05_RS08930 (NIY05_08930) - 1871398..1871952 (+) 555 WP_000841373.1 type II secretion system protein -
  NIY05_RS08935 (NIY05_08935) xcpV 1871942..1872322 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  NIY05_RS08940 (NIY05_08940) xcpW 1872322..1873023 (+) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NIY05_RS08945 (NIY05_08945) gspK 1873023..1873982 (+) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  NIY05_RS08950 (NIY05_08950) - 1874213..1874809 (+) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  NIY05_RS08955 (NIY05_08955) ung 1874860..1875573 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  NIY05_RS08960 (NIY05_08960) - 1875570..1876694 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  NIY05_RS08965 (NIY05_08965) tadA 1876701..1877204 (+) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=701994 NIY05_RS08935 WP_000836911.1 1871942..1872322(+) (xcpV) [Acinetobacter baumannii strain A54R]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=701994 NIY05_RS08935 WP_000836911.1 1871942..1872322(+) (xcpV) [Acinetobacter baumannii strain A54R]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1