Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NHM99_RS13475 Genome accession   NZ_CP099801
Coordinates   2590581..2591162 (-) Length   193 a.a.
NCBI ID   WP_000991609.1    Uniprot ID   A0A853X8N5
Organism   Bacillus paranthracis strain SSBC101     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2585581..2596162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM99_RS13445 (NHM99_13445) - 2585598..2586434 (-) 837 WP_000557575.1 PP2C family serine/threonine-protein phosphatase -
  NHM99_RS13450 (NHM99_13450) - 2586418..2586903 (-) 486 WP_002080579.1 HIT family protein -
  NHM99_RS13455 (NHM99_13455) - 2587006..2587176 (-) 171 WP_001992228.1 hypothetical protein -
  NHM99_RS13460 (NHM99_13460) - 2587473..2588309 (-) 837 WP_001084753.1 proline/glycine betaine ABC transporter permease -
  NHM99_RS13465 (NHM99_13465) - 2588302..2589507 (-) 1206 WP_253130415.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  NHM99_RS13470 (NHM99_13470) - 2589678..2590535 (+) 858 WP_001227645.1 glycine betaine ABC transporter substrate-binding protein -
  NHM99_RS13475 (NHM99_13475) clpP 2590581..2591162 (-) 582 WP_000991609.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NHM99_RS13480 (NHM99_13480) - 2591184..2591870 (-) 687 WP_000337489.1 RNA polymerase subunit sigma-70 -
  NHM99_RS13485 (NHM99_13485) - 2592014..2592334 (+) 321 WP_001125382.1 2Fe-2S iron-sulfur cluster-binding protein -
  NHM99_RS13490 (NHM99_13490) rpiA 2592339..2593001 (+) 663 WP_001049998.1 ribose 5-phosphate isomerase A -
  NHM99_RS13495 (NHM99_13495) - 2593110..2593544 (+) 435 WP_000555714.1 GNAT family N-acetyltransferase -
  NHM99_RS13500 (NHM99_13500) - 2593675..2595042 (-) 1368 WP_000795732.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21192.49 Da        Isoelectric Point: 5.3394

>NTDB_id=701694 NHM99_RS13475 WP_000991609.1 2590581..2591162(-) (clpP) [Bacillus paranthracis strain SSBC101]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=701694 NHM99_RS13475 WP_000991609.1 2590581..2591162(-) (clpP) [Bacillus paranthracis strain SSBC101]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGTATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCGGGATTTGCTATATTAGATACA
ATGAATTTAATCAAACCTGATGTACAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCGAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCAAAAGGGCAGGCAA
CAGAAATTGAAATAACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853X8N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492