Detailed information NTG0700016

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PCP09_RS04580
• Genome accession: NZ_CP115261
• Coordinates: 983258..984751 (+)
• Length: 497 a.a.
• NCBI ID: WP_049308005.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F025
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 978258..989751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP09_RS04550 (PCP09_04545)	-	978401..979315 (-)	915	WP_003118059.1	fimbrial protein	-
PCP09_RS04555 (PCP09_04550)	sutA	979730..980047 (-)	318	WP_003098240.1	transcriptional regulator SutA	-
PCP09_RS04560 (PCP09_04555)	-	980125..980550 (-)	426	WP_003096441.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
PCP09_RS04565 (PCP09_04560)	-	980811..982139 (-)	1329	WP_003098243.1	ammonium transporter	-
PCP09_RS04570 (PCP09_04565)	glnK	982179..982517 (-)	339	WP_003096476.1	P-II family nitrogen regulator	-
PCP09_RS04575 (PCP09_04570)	-	982957..983217 (+)	261	WP_003096478.1	accessory factor UbiK family protein	-
PCP09_RS04580 (PCP09_04575)	comM	983258..984751 (+)	1494	WP_049308005.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PCP09_RS04585 (PCP09_04580)	betT	984876..986861 (+)	1986	WP_003096496.1	choline BCCT transporter BetT	-
PCP09_RS04590 (PCP09_04585)	pchP	986904..987953 (-)	1050	WP_003110458.1	phosphorylcholine phosphatase	-
PCP09_RS04595 (PCP09_04590)	-	988104..989021 (-)	918	WP_003098255.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53117.06 Da
• Isoelectric Point: 7.9587

>NTDB_id=700016 PCP09_RS04580 WP_049308005.1 983258..984751(+) (comM) [Pseudomonas aeruginosa strain F025]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTAFDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide

• Length: 1494 bp

>NTDB_id=700016 PCP09_RS04580 WP_049308005.1 983258..984751(+) (comM) [Pseudomonas aeruginosa strain F025]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCTTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-492)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	54.99	100	0.565
comM	Vibrio campbellii strain DS40M4	56.539	100	0.565
comM	Vibrio cholerae O1 biovar El Tor strain E7946	56.137	100	0.561
comM	Vibrio cholerae strain A1552	56.137	100	0.561
comM	Glaesserella parasuis strain SC1401	54.98	100	0.555
comM	Acinetobacter baylyi ADP1	53.614	100	0.537
comM	Legionella pneumophila str. Paris	49.9	100	0.501
comM	Legionella pneumophila strain ERS1305867	49.9	100	0.501
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.866	100	0.469
comM	Helicobacter pylori 26695	39.044	100	0.394