Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NE411_RS18515 Genome accession   NZ_CP099450
Coordinates   3487270..3487851 (+) Length   193 a.a.
NCBI ID   WP_001049154.1    Uniprot ID   A0A2N1JX27
Organism   Bacillus pacificus strain ANSB901     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482270..3492851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS18475 (NE411_18440) - 3482705..3483058 (-) 354 WP_000734942.1 YxeA family protein -
  NE411_RS18480 (NE411_18445) - 3483264..3483470 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  NE411_RS18485 (NE411_18450) - 3483564..3484052 (+) 489 WP_001226063.1 YhcN/YlaJ family sporulation lipoprotein -
  NE411_RS18490 (NE411_18455) spoVAC 3484082..3484558 (+) 477 WP_000095406.1 stage V sporulation protein AC -
  NE411_RS18495 (NE411_18460) spoVAD 3484559..3485575 (+) 1017 WP_000938952.1 stage V sporulation protein AD -
  NE411_RS18500 (NE411_18465) spoVAE 3485572..3485922 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  NE411_RS18505 (NE411_18470) - 3485932..3486138 (+) 207 WP_000215900.1 DUF1657 domain-containing protein -
  NE411_RS18510 (NE411_18475) - 3486159..3487028 (+) 870 WP_000018909.1 DUF421 domain-containing protein -
  NE411_RS18515 (NE411_18480) clpP 3487270..3487851 (+) 582 WP_001049154.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NE411_RS18520 (NE411_18485) - 3488244..3488492 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  NE411_RS18525 (NE411_18490) whiA 3488516..3489466 (-) 951 WP_000006561.1 DNA-binding protein WhiA -
  NE411_RS18530 (NE411_18495) - 3489556..3490509 (-) 954 WP_000712176.1 gluconeogenesis factor YvcK family protein -
  NE411_RS18535 (NE411_18500) rapZ 3490513..3491394 (-) 882 WP_000138457.1 RNase adapter RapZ -
  NE411_RS18540 (NE411_18505) - 3491415..3491873 (-) 459 WP_001190080.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21405.64 Da        Isoelectric Point: 5.0344

>NTDB_id=699599 NE411_RS18515 WP_001049154.1 3487270..3487851(+) (clpP) [Bacillus pacificus strain ANSB901]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDIHLYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=699599 NE411_RS18515 WP_001049154.1 3487270..3487851(+) (clpP) [Bacillus pacificus strain ANSB901]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGACAAAGATATTCACCTATACATCAATAGTCCAGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCGCAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTGCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGTGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCTAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N1JX27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

97.409

0.658
  clpP Streptococcus thermophilus LMG 18311

60.938

99.482

0.606
  clpP Streptococcus thermophilus LMD-9

60.938

99.482

0.606
  clpP Lactococcus lactis subsp. cremoris KW2

59.375

99.482

0.591
  clpP Streptococcus pneumoniae Rx1

57.812

99.482

0.575
  clpP Streptococcus pneumoniae D39

57.812

99.482

0.575
  clpP Streptococcus pneumoniae R6

57.812

99.482

0.575
  clpP Streptococcus pneumoniae TIGR4

57.812

99.482

0.575
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.292

99.482

0.57
  clpP Streptococcus mutans UA159

55.959

100

0.56
  clpP Streptococcus pyogenes JRS4

56.25

99.482

0.56
  clpP Streptococcus pyogenes MGAS315

56.25

99.482

0.56