Detailed information NTG0697995

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: M5C73_RS11640
• Genome accession: NZ_CP098790
• Coordinates: 2329925..2330944 (-)
• Length: 339 a.a.
• NCBI ID: WP_047206974.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain WiKim0124
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2324925..2335944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5C73_RS11595 (M5C73_11595)	-	2325064..2325873 (-)	810	WP_014570791.1	metal ABC transporter permease	-
M5C73_RS11600 (M5C73_11600)	-	2325866..2326603 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
M5C73_RS11605 (M5C73_11605)	-	2326780..2327622 (-)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
M5C73_RS11610 (M5C73_11610)	-	2327619..2328056 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
M5C73_RS11615 (M5C73_11615)	comGG	2328137..2328421 (-)	285	WP_017865155.1	competence type IV pilus minor pilin ComGG	Machinery gene
M5C73_RS11620 (M5C73_11620)	comGF	2328460..2328885 (-)	426	WP_161935022.1	competence type IV pilus minor pilin ComGF	Machinery gene
M5C73_RS11625 (M5C73_11625)	comGE	2328869..2329165 (-)	297	WP_250354455.1	competence type IV pilus minor pilin ComGE	Machinery gene
M5C73_RS11630 (M5C73_11630)	comGD	2329137..2329553 (-)	417	WP_032941843.1	competence type IV pilus minor pilin ComGD	Machinery gene
M5C73_RS11635 (M5C73_11635)	comGC	2329528..2329911 (-)	384	WP_080735951.1	competence type IV pilus major pilin ComGC	Machinery gene
M5C73_RS11640 (M5C73_11640)	comGB	2329925..2330944 (-)	1020	WP_047206974.1	competence type IV pilus assembly protein ComGB	Machinery gene
M5C73_RS11645 (M5C73_11645)	comGA	2330892..2331830 (-)	939	WP_058203709.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 339 a.a.
• Molecular weight: 38256.98 Da
• Isoelectric Point: 10.1935

>NTDB_id=697995 M5C73_RS11640 WP_047206974.1 2329925..2330944(-) (comGB) [Lactococcus lactis strain WiKim0124]
MDISHLLKPKGKKLRLIKQAKLIQLMGNLLNSGFNLGEVINFLSLSKLVEKEFTLKMKEGLASGQALSELLESLSFSKNV
VTQLALVEVHGNLSGTMQLVELHLKKQLKVKNKLVEVATYPILLLIFLVGIMWGLKNYLLPQLNSGSNFATLLINHLPLV
FFSFGAFIFLLTALSVTLLKRKSAIMNFTFLVKLPLVHSFIRLYLTAYFAREWGNLIAQGVELRQIINLMKKQKSRIFSE
VGKNLDLELNAGRSFEQAVSKLALFLPELSLMIEYGAIKDKLGLELSLYADECWEQFFTKIDRLMQLIQPLVFIFVALMI
ILLYAAMLLPIYSNMGSGI

Nucleotide

• Length: 1020 bp

>NTDB_id=697995 M5C73_RS11640 WP_047206974.1 2329925..2330944(-) (comGB) [Lactococcus lactis strain WiKim0124]
ATGGATATCTCACACCTACTGAAGCCAAAAGGGAAAAAATTAAGACTGATTAAACAAGCCAAACTTATCCAACTGATGGG
AAATCTTTTGAATAGTGGATTTAATTTAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAGAATTTA
CATTAAAAATGAAAGAAGGTCTCGCTTCTGGTCAAGCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTG
GTGACACAACTTGCTTTGGTAGAAGTGCATGGTAACTTGTCAGGGACGATGCAATTAGTTGAACTTCATCTAAAAAAACA
GCTTAAAGTTAAAAATAAATTAGTGGAAGTTGCTACTTATCCAATATTGTTATTAATTTTTCTGGTTGGAATTATGTGGG
GCTTAAAAAATTATTTACTACCACAACTCAATAGTGGCAGTAACTTTGCTACTCTATTGATTAATCATTTACCCTTAGTA
TTTTTTTCGTTTGGAGCTTTTATATTTTTACTGACAGCTTTGTCAGTAACTCTTTTAAAACGAAAATCAGCAATAATGAA
TTTTACATTTCTTGTTAAATTACCCCTGGTTCATTCTTTTATCCGTTTATATTTAACAGCTTACTTTGCAAGAGAATGGG
GAAATCTAATTGCTCAAGGTGTTGAATTACGTCAAATTATTAACTTGATGAAAAAACAAAAAAGTCGAATTTTTTCAGAA
GTTGGCAAGAATCTTGATTTAGAATTGAATGCTGGTCGGTCTTTTGAACAAGCTGTCAGTAAACTTGCGCTTTTTTTACC
CGAGCTCTCGTTAATGATTGAATATGGAGCTATTAAAGATAAATTAGGCTTAGAGCTTTCGCTGTATGCGGATGAATGTT
GGGAACAATTTTTTACAAAGATAGATCGTTTAATGCAATTAATCCAACCTCTTGTTTTTATTTTTGTAGCATTGATGATT
ATTTTGCTATATGCAGCCATGTTACTCCCCATCTATTCAAATATGGGTTCTGGAATATAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (23-141)

• Type II secretion system (T2SS), protein F (T2SSF) (209-330)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Lactococcus lactis subsp. cremoris KW2	83.728	99.705	0.835
comYB	Streptococcus gordonii str. Challis substr. CH1	53.593	98.525	0.528
comGB/cglB	Streptococcus mitis SK321	51.343	98.82	0.507
comGB/cglB	Streptococcus pneumoniae TIGR4	51.045	98.82	0.504
comGB/cglB	Streptococcus pneumoniae Rx1	51.045	98.82	0.504
comGB/cglB	Streptococcus pneumoniae D39	51.045	98.82	0.504
comGB/cglB	Streptococcus pneumoniae R6	51.045	98.82	0.504
comGB/cglB	Streptococcus mitis NCTC 12261	50.448	98.82	0.499
comYB	Streptococcus mutans UA140	52.866	92.625	0.49
comYB	Streptococcus mutans UA159	52.548	92.625	0.487