Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NDR85_RS17475 Genome accession   NZ_CP098738
Coordinates   3456020..3456616 (+) Length   198 a.a.
NCBI ID   WP_044159265.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451020..3461616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS17445 (NDR85_17405) aspP 3451983..3453545 (+) 1563 WP_044159259.1 aspartate/proton symporter AspP -
  NDR85_RS17450 (NDR85_17410) - 3453641..3454225 (+) 585 WP_044159262.1 TetR family transcriptional regulator -
  NDR85_RS17455 (NDR85_17415) - 3454303..3454638 (+) 336 WP_044160350.1 multidrug efflux SMR transporter -
  NDR85_RS17460 (NDR85_17420) - 3454638..3454952 (+) 315 WP_024122952.1 multidrug efflux SMR transporter -
  NDR85_RS17465 (NDR85_17425) - 3454999..3455514 (-) 516 WP_024122953.1 DUF3231 family protein -
  NDR85_RS17475 (NDR85_17435) clpP 3456020..3456616 (+) 597 WP_044159265.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  NDR85_RS17480 (NDR85_17440) pgmB 3456734..3457414 (-) 681 WP_044159267.1 beta-phosphoglucomutase -
  NDR85_RS17485 (NDR85_17445) - 3457411..3459096 (-) 1686 WP_044159270.1 alpha-glucosidase -
  NDR85_RS17490 (NDR85_17450) - 3459089..3461362 (-) 2274 WP_263870751.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21845.09 Da        Isoelectric Point: 4.7048

>NTDB_id=697580 NDR85_RS17475 WP_044159265.1 3456020..3456616(+) (clpP) [Bacillus halotolerans strain XE48]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNSEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=697580 NDR85_RS17475 WP_044159265.1 3456020..3456616(+) (clpP) [Bacillus halotolerans strain XE48]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTTTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCGG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGTCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCTTGCTTGCTGCCGG
AGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGAGCTCAAGGTCAAGCGA
CAGAAATTGAAATTGCCGCGAAACGTATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAACGTACTGGCCAG
CCTCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTCTGACTCGCAACTCAGAAGATCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

96.465

100

0.965
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae D39

58.247

97.98

0.571
  clpP Streptococcus pneumoniae Rx1

58.247

97.98

0.571
  clpP Streptococcus pneumoniae R6

58.247

97.98

0.571
  clpP Streptococcus pneumoniae TIGR4

58.247

97.98

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

57.732

97.98

0.566
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.67

97.98

0.545
  clpP Streptococcus mutans UA159

55.155

97.98

0.54