Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDR94_RS05515 Genome accession   NZ_CP098731
Coordinates   1171044..1172261 (+) Length   405 a.a.
NCBI ID   WP_011912244.1    Uniprot ID   A4VIF2
Organism   Stutzerimonas stutzeri strain NRCB010     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1166044..1177261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR94_RS05495 (NDR94_05495) - 1167008..1167562 (-) 555 WP_011912240.1 REP-associated tyrosine transposase -
  NDR94_RS05500 (NDR94_05500) - 1168517..1169029 (-) 513 WP_011912242.1 pilin -
  NDR94_RS05510 (NDR94_05510) pilB 1169339..1171042 (+) 1704 WP_011912243.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDR94_RS05515 (NDR94_05515) pilC 1171044..1172261 (+) 1218 WP_011912244.1 type II secretion system F family protein Machinery gene
  NDR94_RS05520 (NDR94_05520) pilD 1172264..1173133 (+) 870 WP_011912245.1 prepilin peptidase Machinery gene
  NDR94_RS05525 (NDR94_05525) coaE 1173265..1173873 (+) 609 WP_080505042.1 dephospho-CoA kinase -
  NDR94_RS05530 (NDR94_05530) yacG 1173870..1174067 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  NDR94_RS05535 (NDR94_05535) - 1174080..1174760 (-) 681 WP_011912247.1 energy-coupling factor ABC transporter permease -
  NDR94_RS05540 (NDR94_05540) - 1174817..1175857 (-) 1041 WP_011912248.1 NADP(H)-dependent aldo-keto reductase -
  NDR94_RS05545 (NDR94_05545) rplM 1176272..1176700 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  NDR94_RS05550 (NDR94_05550) rpsI 1176716..1177108 (+) 393 WP_011912249.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44142.91 Da        Isoelectric Point: 9.8656

>NTDB_id=697432 NDR94_RS05515 WP_011912244.1 1171044..1172261(+) (pilC) [Stutzerimonas stutzeri strain NRCB010]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGISPAMVKAQLRKQGVNPQKVRKKSASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIVLVGLIAGAFAFK
EAHKRSEKFRNWFDRLLLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATMKVKSDVSSGM
QLNFSMRTTGTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=697432 NDR94_RS05515 WP_011912244.1 1171044..1172261(+) (pilC) [Stutzerimonas stutzeri strain NRCB010]
ATGGCGCAGAAAGCGATTAAAACCAGTGTGTTCACCTGGGAAGGCACCAACAAGCAGGGTGCGAAGATCAAGGGCGAGCT
AAGCGGGATCAGCCCTGCGATGGTCAAGGCGCAGCTGCGCAAGCAGGGCGTAAACCCTCAAAAGGTGCGTAAGAAGTCGG
CGTCGCTGTTCAGTGCTGGCAAGAAGATCAAGCCGATGGATATCGCCTTGTTCACTCGTCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGCTGCAGTCATTCGACATTATTGGCGAGGGGTTCGATAACCCGAACATGCGTAAGCTGGTCGATGA
TCTCAAGCAGGAGGTCGCGGCGGGTAACAGTTTCGCCACTGCGTTGCGCAAGAAGCCGCAGTACTTTGACGATCTCTACT
GCAACCTAGTGGACTCCGGGGAGCAGTCTGGTTCCTTGGAGACGTTGCTTGATCGCGTCGCAACCTACAAGGAAAAAACC
GAGGCTCTCAAGGCAAAGATCAAGAAGGCGATGAATTATCCCATTGCGGTAGTGTTGGTGGCGATCATCGTGTCGGCCAT
TCTGTTGATCAAGGTGGTGCCACAGTTCCAAGAGGTGTTTGCCAACTTCGGGGCCGAGCTTCCGGCTTTTACCTTGATGG
TAATTGGGTTGTCGGAAGCGCTCCAGGAGTGGTGGTTCATTGTTCTGGTGGGGCTGATTGCGGGCGCTTTTGCTTTCAAG
GAGGCGCACAAGCGCTCCGAGAAATTCCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTACCGGTTGTTGGTGACATTCT
TTACAAGTCATCGGTCGCCCGCTTCGCCCGCACTCTATCGACGACTTTCGCTGCGGGCGTGCCACTTGTGGATGCGCTGG
ATTCGGTGGCTGGGGCTACAGGCAATGTGGTCTTTCGAAGTGCGACGATGAAAGTCAAAAGTGACGTATCGTCTGGCATG
CAGCTGAACTTCTCCATGCGCACCACCGGTACCTTTCCAACCATGGCGGTGCAAATGACGGCGATTGGCGAGGAGTCAGG
CTCGCTTGACGAGATGTTGGCCAAGGTGGCGACCTTCTACGAGGATGAGGTCGATAACATGGTTGATAGCCTGACTAGCC
TGATGGAGCCAATGATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATCATCGCTATGTACCTTCCGATCTTCCAG
CTAGGTGCTGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4VIF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.605

100

0.916
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

59.506

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria gonorrhoeae MS11

45.161

99.506

0.449
  pilG Neisseria meningitidis 44/76-A

45.161

99.506

0.449
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4