Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   UNDYM_RS04035 Genome accession   NZ_AP018441
Coordinates   877976..879211 (-) Length   411 a.a.
NCBI ID   WP_162039885.1    Uniprot ID   A0A809QDR4
Organism   Undibacterium sp. YM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 872976..884211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDYM_RS04005 (UNDYM_0809) - 873175..873738 (+) 564 WP_162039880.1 hypothetical protein -
  UNDYM_RS04010 (UNDYM_0810) - 873782..875338 (+) 1557 WP_162039881.1 sigma-54-dependent transcriptional regulator -
  UNDYM_RS04015 (UNDYM_0811) - 875369..875548 (-) 180 WP_162039882.1 DNA gyrase inhibitor YacG -
  UNDYM_RS04020 (UNDYM_0812) zapD 875551..876306 (-) 756 WP_162039883.1 cell division protein ZapD -
  UNDYM_RS04025 coaE 876481..877107 (-) 627 WP_162044436.1 dephospho-CoA kinase -
  UNDYM_RS04030 (UNDYM_0813) pilD 877116..877940 (-) 825 WP_370529436.1 A24 family peptidase Machinery gene
  UNDYM_RS04035 (UNDYM_0814) pilC 877976..879211 (-) 1236 WP_162039885.1 type II secretion system F family protein Machinery gene
  UNDYM_RS04040 (UNDYM_0815) pilF 879227..880954 (-) 1728 WP_162039886.1 type IV-A pilus assembly ATPase PilB Machinery gene
  UNDYM_RS04045 (UNDYM_0816) ispB 881279..882208 (-) 930 WP_162044437.1 octaprenyl diphosphate synthase -
  UNDYM_RS04050 (UNDYM_0817) rplU 882523..882834 (+) 312 WP_162020347.1 50S ribosomal protein L21 -
  UNDYM_RS04055 (UNDYM_0818) rpmA 882884..883153 (+) 270 WP_162039887.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44597.39 Da        Isoelectric Point: 9.7747

>NTDB_id=69625 UNDYM_RS04035 WP_162039885.1 877976..879211(-) (pilC) [Undibacterium sp. YM2]
MATNLAKSAKSGQPKEQLYAWEGKDKFGKVVRGETRAGGEAIVNATLRRQGILVTKLKKKNYTSGKAITDKDITLFTRQL
ATMMKAGVPLLQSFDIVSKGHSNPSVSKLLQDIRGDVETGTSLNAAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAI
YKEKTMAIKAKIKSALTYPIAILGIAFIVTAVIMIWVVPAFKQAFSSFGAELPAPTLIVMNISDNFVKYWYIIFGGLFGS
IYFFFQTWRRSLKMQQFMDRALLQAPIFGDVIKKATIARWTRTLATMFAAGVPLVESLDSVGGAAGNAVYLDATIKIQTE
VSTGTSLTVAMQNANVFPSMVTQMVAIGEESGALDQMLGKVADFYEDEVDEAVAALSSLMEPIIMVILGVVIGGLVVAMY
LPIFKMGSVAG

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=69625 UNDYM_RS04035 WP_162039885.1 877976..879211(-) (pilC) [Undibacterium sp. YM2]
ATGGCAACCAATCTGGCAAAATCAGCAAAATCAGGGCAACCCAAAGAGCAACTATATGCCTGGGAAGGCAAGGACAAGTT
TGGCAAGGTCGTCAGGGGCGAAACGCGCGCTGGTGGTGAAGCCATCGTCAATGCCACCCTGCGCAGACAAGGTATCCTGG
TTACCAAATTAAAAAAGAAGAATTACACCTCCGGCAAGGCGATTACTGATAAAGACATCACTCTGTTTACCCGTCAGCTG
GCAACGATGATGAAGGCAGGCGTACCGCTACTGCAGTCTTTTGATATTGTATCCAAAGGCCACAGCAACCCTTCAGTCTC
GAAATTACTGCAGGACATCCGTGGTGACGTTGAAACCGGTACCAGCCTGAACGCAGCTTTCCGCAAGTTCCCTTTATATT
TTGACCCGCTGTTCTGCAATCTCGTGGGTGCAGGTGAACAAGCCGGTATCCTGGAAGATTTGCTGACCCGTCTGGCCATC
TACAAAGAAAAAACCATGGCCATCAAGGCCAAGATCAAGTCAGCGCTGACTTACCCTATCGCCATTCTGGGCATCGCTTT
CATCGTGACCGCGGTTATCATGATCTGGGTGGTGCCAGCGTTTAAGCAGGCTTTCAGCAGCTTTGGTGCAGAATTGCCAG
CACCTACCCTGATCGTCATGAACATTTCGGACAATTTCGTTAAATACTGGTACATCATCTTTGGCGGACTGTTTGGCAGT
ATCTACTTCTTTTTCCAGACATGGCGTCGCTCCCTGAAGATGCAACAATTCATGGATAGAGCTCTGTTACAGGCACCGAT
TTTTGGCGACGTGATAAAAAAAGCAACCATAGCACGCTGGACGCGCACGCTGGCCACCATGTTTGCCGCTGGTGTGCCTT
TGGTTGAATCCCTGGATTCGGTTGGTGGCGCTGCCGGTAATGCCGTCTATCTTGACGCAACCATCAAAATTCAAACCGAA
GTCAGCACTGGTACCAGCCTGACAGTTGCCATGCAGAACGCCAATGTATTTCCTTCCATGGTCACGCAAATGGTGGCAAT
TGGTGAGGAATCCGGTGCGCTTGATCAAATGCTGGGCAAAGTTGCTGACTTTTATGAAGATGAAGTCGATGAAGCCGTCG
CTGCCCTGTCTAGCCTGATGGAACCTATCATCATGGTGATTTTGGGTGTGGTCATTGGTGGCCTGGTGGTTGCCATGTAC
TTGCCTATCTTCAAAATGGGTTCGGTCGCAGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809QDR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.02

96.837

0.523
  pilC Legionella pneumophila strain ERS1305867

54.061

95.864

0.518
  pilG Neisseria gonorrhoeae MS11

52.778

96.35

0.509
  pilG Neisseria meningitidis 44/76-A

52.525

96.35

0.506
  pilC Acinetobacter baumannii D1279779

52.02

96.35

0.501
  pilC Acinetobacter baylyi ADP1

50.63

96.594

0.489
  pilC Vibrio campbellii strain DS40M4

40.295

99.027

0.399
  pilC Vibrio cholerae strain A1552

40.704

96.837

0.394

Multiple sequence alignment